Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11438 | 5' | -54 | NC_003085.1 | + | 42872 | 0.66 | 0.743068 |
Target: 5'- cCcgGC-CGGgGGCGUGUcgagggugagGCCGAGGUc -3' miRNA: 3'- -GuaCGcGCCgCUGUACAa---------CGGCUUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 24549 | 0.66 | 0.75261 |
Target: 5'- gCGUGCGCGGCG-CGgacaUGCCuGAccucaucaugucuGGCa -3' miRNA: 3'- -GUACGCGCCGCuGUaca-ACGG-CU-------------UCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 14666 | 0.66 | 0.753664 |
Target: 5'- --aGCGCGGCaagGACuUGgaggcGCCGuGGCg -3' miRNA: 3'- guaCGCGCCG---CUGuACaa---CGGCuUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 44318 | 0.66 | 0.753664 |
Target: 5'- --gGUGuuGCGACAUGgaUGCCuGGGCg -3' miRNA: 3'- guaCGCgcCGCUGUACa-ACGGcUUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 34929 | 0.66 | 0.753664 |
Target: 5'- gGUGCaggcgcacGCGGCGGa--GUUGCUGGccGGCg -3' miRNA: 3'- gUACG--------CGCCGCUguaCAACGGCU--UCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 48486 | 0.66 | 0.753664 |
Target: 5'- -uUGgGacaCGGCGGCGUGUccUGCCccGGCa -3' miRNA: 3'- guACgC---GCCGCUGUACA--ACGGcuUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 23590 | 0.66 | 0.753664 |
Target: 5'- uCcgGCaCGGCGGCGaGUUGCuCGAcGGUg -3' miRNA: 3'- -GuaCGcGCCGCUGUaCAACG-GCU-UCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 11098 | 0.66 | 0.753664 |
Target: 5'- gAUGuCGcCGGCGGCAUucgUGCCcagGAAGUu -3' miRNA: 3'- gUAC-GC-GCCGCUGUAca-ACGG---CUUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 6289 | 0.66 | 0.761006 |
Target: 5'- --cGCGCGGCGguggagcgacuggaGCAg---GCCG-AGCg -3' miRNA: 3'- guaCGCGCCGC--------------UGUacaaCGGCuUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 25726 | 0.66 | 0.764132 |
Target: 5'- aCGUGUccuuCGGCGccACGgugGggGCCGggGCc -3' miRNA: 3'- -GUACGc---GCCGC--UGUa--CaaCGGCuuCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 26721 | 0.66 | 0.764132 |
Target: 5'- --aGgGCGGUGACGgcgcGgcGCCGguGCu -3' miRNA: 3'- guaCgCGCCGCUGUa---CaaCGGCuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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