Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11438 | 5' | -54 | NC_003085.1 | + | 9339 | 0.71 | 0.440054 |
Target: 5'- --cGCGCGGCGGCcaggaccagcaGCCGAGGUc -3' miRNA: 3'- guaCGCGCCGCUGuacaa------CGGCUUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 3939 | 0.71 | 0.439063 |
Target: 5'- --aGCGCcGCGGCgAUGUUGUCGcGGCc -3' miRNA: 3'- guaCGCGcCGCUG-UACAACGGCuUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 22898 | 0.72 | 0.419526 |
Target: 5'- gGUGCGacucCGGCGGag-GcUGCCGggGCg -3' miRNA: 3'- gUACGC----GCCGCUguaCaACGGCuuCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 24298 | 0.72 | 0.419526 |
Target: 5'- --gGCGCGGaUGA-AUGUcGCCGAGGCc -3' miRNA: 3'- guaCGCGCC-GCUgUACAaCGGCUUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 3780 | 0.72 | 0.409956 |
Target: 5'- cCGUGacuCGCGGCuGACGgac-GCCGAAGCg -3' miRNA: 3'- -GUAC---GCGCCG-CUGUacaaCGGCUUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 26214 | 0.72 | 0.400524 |
Target: 5'- uGUGCGCgGGCGGCGcGgUGC-GAAGCg -3' miRNA: 3'- gUACGCG-CCGCUGUaCaACGgCUUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 15924 | 0.73 | 0.355496 |
Target: 5'- uCGUGCGUGGaCGGCGUGUgacaggcucgGCUGGuGGCg -3' miRNA: 3'- -GUACGCGCC-GCUGUACAa---------CGGCU-UCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 16750 | 0.74 | 0.314153 |
Target: 5'- --gGUGUGGCGACGcacUGUUGCCGcaauGCc -3' miRNA: 3'- guaCGCGCCGCUGU---ACAACGGCuu--CG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 14046 | 0.75 | 0.262549 |
Target: 5'- -cUGCGCGaCGGCGUGUccGUCGAGGCc -3' miRNA: 3'- guACGCGCcGCUGUACAa-CGGCUUCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 40586 | 0.79 | 0.156784 |
Target: 5'- gCAUGCcagacGCGGUGACGUGgaUGCCGAuGCa -3' miRNA: 3'- -GUACG-----CGCCGCUGUACa-ACGGCUuCG- -5' |
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11438 | 5' | -54 | NC_003085.1 | + | 33568 | 1.12 | 0.00064 |
Target: 5'- cCAUGCGCGGCGACAUGUUGCCGAAGCg -3' miRNA: 3'- -GUACGCGCCGCUGUACAACGGCUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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