miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11438 5' -54 NC_003085.1 + 43212 0.69 0.576725
Target:  5'- ----gGCGGCGuCGUGUaggcgucgaccaUGUCGGAGCg -3'
miRNA:   3'- guacgCGCCGCuGUACA------------ACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 44318 0.66 0.753664
Target:  5'- --gGUGuuGCGACAUGgaUGCCuGGGCg -3'
miRNA:   3'- guaCGCgcCGCUGUACa-ACGGcUUCG- -5'
11438 5' -54 NC_003085.1 + 45117 0.68 0.632665
Target:  5'- --cGCGCGGCGuagGCAU--UGCCGucGUc -3'
miRNA:   3'- guaCGCGCCGC---UGUAcaACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 46009 0.68 0.632665
Target:  5'- gGUGCuCGGCGuACGUGgucgccUGCuCGAAGUu -3'
miRNA:   3'- gUACGcGCCGC-UGUACa-----ACG-GCUUCG- -5'
11438 5' -54 NC_003085.1 + 46400 0.69 0.554617
Target:  5'- uGUGCGCGGUGACAUcgcaGUgGUCu-GGCg -3'
miRNA:   3'- gUACGCGCCGCUGUA----CAaCGGcuUCG- -5'
11438 5' -54 NC_003085.1 + 46638 0.71 0.45911
Target:  5'- -cUGC-CGGgcaGACGUGUugccagugaUGCCGAGGCg -3'
miRNA:   3'- guACGcGCCg--CUGUACA---------ACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 47142 0.7 0.490063
Target:  5'- gAUGaaGCGGCGGCcgG-UGgCGAGGCa -3'
miRNA:   3'- gUACg-CGCCGCUGuaCaACgGCUUCG- -5'
11438 5' -54 NC_003085.1 + 47354 0.67 0.655107
Target:  5'- cCAUGCGU-GCGACAaGcUGUCGAGGa -3'
miRNA:   3'- -GUACGCGcCGCUGUaCaACGGCUUCg -5'
11438 5' -54 NC_003085.1 + 47494 0.67 0.688576
Target:  5'- uCAUGCacGCGGCGGaaccUGUcggUGgCGAAGCc -3'
miRNA:   3'- -GUACG--CGCCGCUgu--ACA---ACgGCUUCG- -5'
11438 5' -54 NC_003085.1 + 48387 0.68 0.599023
Target:  5'- --aGCGCGGCGAgCAgcgccgcauUGUcUGCCucGGCg -3'
miRNA:   3'- guaCGCGCCGCU-GU---------ACA-ACGGcuUCG- -5'
11438 5' -54 NC_003085.1 + 48486 0.66 0.753664
Target:  5'- -uUGgGacaCGGCGGCGUGUccUGCCccGGCa -3'
miRNA:   3'- guACgC---GCCGCUGUACA--ACGGcuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.