miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11438 5' -54 NC_003085.1 + 19704 0.68 0.610221
Target:  5'- --cGCGCGGCGGCAUc-UGCaccuucGAGCa -3'
miRNA:   3'- guaCGCGCCGCUGUAcaACGgc----UUCG- -5'
11438 5' -54 NC_003085.1 + 19279 0.66 0.743068
Target:  5'- --aGCGCu-CGACAg---GCCGGAGCa -3'
miRNA:   3'- guaCGCGccGCUGUacaaCGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 19064 0.67 0.655107
Target:  5'- --cGCGCGGCGgaGCA-GgcGCCG-GGCc -3'
miRNA:   3'- guaCGCGCCGC--UGUaCaaCGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 18235 0.68 0.632665
Target:  5'- --cGCGCucaGGCGACAcGccgaUGuCCGAGGCg -3'
miRNA:   3'- guaCGCG---CCGCUGUaCa---AC-GGCUUCG- -5'
11438 5' -54 NC_003085.1 + 18077 0.67 0.710625
Target:  5'- --cGUGCGGCuGGCcucuuUGcgGCCGggGUc -3'
miRNA:   3'- guaCGCGCCG-CUGu----ACaaCGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 17938 0.7 0.511229
Target:  5'- --aGCGCGGCG-CucUGggcucUGCUGggGCa -3'
miRNA:   3'- guaCGCGCCGCuGu-ACa----ACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 16750 0.74 0.314153
Target:  5'- --gGUGUGGCGACGcacUGUUGCCGcaauGCc -3'
miRNA:   3'- guaCGCGCCGCUGU---ACAACGGCuu--CG- -5'
11438 5' -54 NC_003085.1 + 16059 0.69 0.575615
Target:  5'- aCGUGCGCcacgacgGGCGuCAUGUUG-CGAcaguGGCu -3'
miRNA:   3'- -GUACGCG-------CCGCuGUACAACgGCU----UCG- -5'
11438 5' -54 NC_003085.1 + 15924 0.73 0.355496
Target:  5'- uCGUGCGUGGaCGGCGUGUgacaggcucgGCUGGuGGCg -3'
miRNA:   3'- -GUACGCGCC-GCUGUACAa---------CGGCU-UCG- -5'
11438 5' -54 NC_003085.1 + 15848 0.69 0.543655
Target:  5'- gGUGCaaGGCGAUugaGUUgagcGCCGAAGCc -3'
miRNA:   3'- gUACGcgCCGCUGua-CAA----CGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 14930 0.67 0.688576
Target:  5'- --gGCGCucGCGGCcgcuGUGUUGCUGAcGCu -3'
miRNA:   3'- guaCGCGc-CGCUG----UACAACGGCUuCG- -5'
11438 5' -54 NC_003085.1 + 14666 0.66 0.753664
Target:  5'- --aGCGCGGCaagGACuUGgaggcGCCGuGGCg -3'
miRNA:   3'- guaCGCGCCG---CUGuACaa---CGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 14046 0.75 0.262549
Target:  5'- -cUGCGCGaCGGCGUGUccGUCGAGGCc -3'
miRNA:   3'- guACGCGCcGCUGUACAa-CGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 12237 0.67 0.6663
Target:  5'- --aGCGCGGCGGCugg--GCCGccagaauugaAGGCc -3'
miRNA:   3'- guaCGCGCCGCUGuacaaCGGC----------UUCG- -5'
11438 5' -54 NC_003085.1 + 11098 0.66 0.753664
Target:  5'- gAUGuCGcCGGCGGCAUucgUGCCcagGAAGUu -3'
miRNA:   3'- gUAC-GC-GCCGCUGUAca-ACGG---CUUCG- -5'
11438 5' -54 NC_003085.1 + 10494 0.68 0.610221
Target:  5'- -cUGCGCGGCGcAC-UGgagaauccGCgGAAGCg -3'
miRNA:   3'- guACGCGCCGC-UGuACaa------CGgCUUCG- -5'
11438 5' -54 NC_003085.1 + 9444 0.66 0.732354
Target:  5'- aCGUGC-CGGCGcuCAUGgacgaGCuCGAGGCc -3'
miRNA:   3'- -GUACGcGCCGCu-GUACaa---CG-GCUUCG- -5'
11438 5' -54 NC_003085.1 + 9339 0.71 0.440054
Target:  5'- --cGCGCGGCGGCcaggaccagcaGCCGAGGUc -3'
miRNA:   3'- guaCGCGCCGCUGuacaa------CGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 8793 0.7 0.479634
Target:  5'- -cUGCGcCGGCGGCuccgcgagGUUGCgCGgcGCa -3'
miRNA:   3'- guACGC-GCCGCUGua------CAACG-GCuuCG- -5'
11438 5' -54 NC_003085.1 + 7512 0.68 0.642769
Target:  5'- gGUGCGUcucgguGGCGGCAaGUggggccaUGCCGuGGGCa -3'
miRNA:   3'- gUACGCG------CCGCUGUaCA-------ACGGC-UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.