miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11438 5' -54 NC_003085.1 + 11098 0.66 0.753664
Target:  5'- gAUGuCGcCGGCGGCAUucgUGCCcagGAAGUu -3'
miRNA:   3'- gUAC-GC-GCCGCUGUAca-ACGG---CUUCG- -5'
11438 5' -54 NC_003085.1 + 21558 0.66 0.742001
Target:  5'- --cGCGCGGCccgcgagggccauGACGaGUUGCuCGGugGGCu -3'
miRNA:   3'- guaCGCGCCG-------------CUGUaCAACG-GCU--UCG- -5'
11438 5' -54 NC_003085.1 + 34192 0.66 0.732354
Target:  5'- --gGCGCGGCGG-GUGagcucgGCCGcGGCc -3'
miRNA:   3'- guaCGCGCCGCUgUACaa----CGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 4500 0.66 0.721536
Target:  5'- --cGCGCuGGCGACugg--GCCaacGAGGCg -3'
miRNA:   3'- guaCGCG-CCGCUGuacaaCGG---CUUCG- -5'
11438 5' -54 NC_003085.1 + 40311 0.66 0.721536
Target:  5'- -cUGCGCGGCGGCGaGcuccGCC-AGGUg -3'
miRNA:   3'- guACGCGCCGCUGUaCaa--CGGcUUCG- -5'
11438 5' -54 NC_003085.1 + 18077 0.67 0.710625
Target:  5'- --cGUGCGGCuGGCcucuuUGcgGCCGggGUc -3'
miRNA:   3'- guaCGCGCCG-CUGu----ACaaCGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 2204 0.67 0.710625
Target:  5'- --cGCGUGGCGGacgGUgacGCCuGAGCa -3'
miRNA:   3'- guaCGCGCCGCUguaCAa--CGGcUUCG- -5'
11438 5' -54 NC_003085.1 + 47494 0.67 0.688576
Target:  5'- uCAUGCacGCGGCGGaaccUGUcggUGgCGAAGCc -3'
miRNA:   3'- -GUACG--CGCCGCUgu--ACA---ACgGCUUCG- -5'
11438 5' -54 NC_003085.1 + 14930 0.67 0.688576
Target:  5'- --gGCGCucGCGGCcgcuGUGUUGCUGAcGCu -3'
miRNA:   3'- guaCGCGc-CGCUG----UACAACGGCUuCG- -5'
11438 5' -54 NC_003085.1 + 12237 0.67 0.6663
Target:  5'- --aGCGCGGCGGCugg--GCCGccagaauugaAGGCc -3'
miRNA:   3'- guaCGCGCCGCUGuacaaCGGC----------UUCG- -5'
11438 5' -54 NC_003085.1 + 25726 0.66 0.764132
Target:  5'- aCGUGUccuuCGGCGccACGgugGggGCCGggGCc -3'
miRNA:   3'- -GUACGc---GCCGC--UGUa--CaaCGGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.