miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11438 5' -54 NC_003085.1 + 41558 0.71 0.449025
Target:  5'- --cGcCGCGGCGGCA-GUcGCgGGAGCc -3'
miRNA:   3'- guaC-GCGCCGCUGUaCAaCGgCUUCG- -5'
11438 5' -54 NC_003085.1 + 3939 0.71 0.439063
Target:  5'- --aGCGCcGCGGCgAUGUUGUCGcGGCc -3'
miRNA:   3'- guaCGCGcCGCUG-UACAACGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 20649 0.67 0.677461
Target:  5'- gAUGaCGUGGCucGCGUcgcgucggaGUUGCUGGAGCg -3'
miRNA:   3'- gUAC-GCGCCGc-UGUA---------CAACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 22898 0.72 0.419526
Target:  5'- gGUGCGacucCGGCGGag-GcUGCCGggGCg -3'
miRNA:   3'- gUACGC----GCCGCUguaCaACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 27615 0.67 0.6663
Target:  5'- -cUGCGCGGUG-UGUGgaGCCuggGggGCu -3'
miRNA:   3'- guACGCGCCGCuGUACaaCGG---CuuCG- -5'
11438 5' -54 NC_003085.1 + 5614 0.7 0.521954
Target:  5'- aGUGaCGCGGUggugGACggGcUGCUGGAGCg -3'
miRNA:   3'- gUAC-GCGCCG----CUGuaCaACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 1585 0.7 0.532765
Target:  5'- --gGCGCGGCGuACGcg-UGCCGuguGCa -3'
miRNA:   3'- guaCGCGCCGC-UGUacaACGGCuu-CG- -5'
11438 5' -54 NC_003085.1 + 45117 0.68 0.632665
Target:  5'- --cGCGCGGCGuagGCAU--UGCCGucGUc -3'
miRNA:   3'- guaCGCGCCGC---UGUAcaACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 19704 0.68 0.610221
Target:  5'- --cGCGCGGCGGCAUc-UGCaccuucGAGCa -3'
miRNA:   3'- guaCGCGCCGCUGUAcaACGgc----UUCG- -5'
11438 5' -54 NC_003085.1 + 10494 0.68 0.610221
Target:  5'- -cUGCGCGGCGcAC-UGgagaauccGCgGAAGCg -3'
miRNA:   3'- guACGCGCCGC-UGuACaa------CGgCUUCG- -5'
11438 5' -54 NC_003085.1 + 24549 0.66 0.75261
Target:  5'- gCGUGCGCGGCG-CGgacaUGCCuGAccucaucaugucuGGCa -3'
miRNA:   3'- -GUACGCGCCGCuGUaca-ACGG-CU-------------UCG- -5'
11438 5' -54 NC_003085.1 + 14666 0.66 0.753664
Target:  5'- --aGCGCGGCaagGACuUGgaggcGCCGuGGCg -3'
miRNA:   3'- guaCGCGCCG---CUGuACaa---CGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 44318 0.66 0.753664
Target:  5'- --gGUGuuGCGACAUGgaUGCCuGGGCg -3'
miRNA:   3'- guaCGCgcCGCUGUACa-ACGGcUUCG- -5'
11438 5' -54 NC_003085.1 + 34929 0.66 0.753664
Target:  5'- gGUGCaggcgcacGCGGCGGa--GUUGCUGGccGGCg -3'
miRNA:   3'- gUACG--------CGCCGCUguaCAACGGCU--UCG- -5'
11438 5' -54 NC_003085.1 + 26721 0.66 0.764132
Target:  5'- --aGgGCGGUGACGgcgcGgcGCCGguGCu -3'
miRNA:   3'- guaCgCGCCGCUGUa---CaaCGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 48387 0.68 0.599023
Target:  5'- --aGCGCGGCGAgCAgcgccgcauUGUcUGCCucGGCg -3'
miRNA:   3'- guaCGCGCCGCU-GU---------ACA-ACGGcuUCG- -5'
11438 5' -54 NC_003085.1 + 34517 0.69 0.581172
Target:  5'- --cGUGCGGCGACAgcgucagcaacacaGcgGCCGcGAGCg -3'
miRNA:   3'- guaCGCGCCGCUGUa-------------CaaCGGC-UUCG- -5'
11438 5' -54 NC_003085.1 + 16059 0.69 0.575615
Target:  5'- aCGUGCGCcacgacgGGCGuCAUGUUG-CGAcaguGGCu -3'
miRNA:   3'- -GUACGCG-------CCGCuGUACAACgGCU----UCG- -5'
11438 5' -54 NC_003085.1 + 19064 0.67 0.655107
Target:  5'- --cGCGCGGCGgaGCA-GgcGCCG-GGCc -3'
miRNA:   3'- guaCGCGCCGC--UGUaCaaCGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 28315 0.67 0.699635
Target:  5'- gGUGCGCGGUGGgAcgGgcGUgGGAGUg -3'
miRNA:   3'- gUACGCGCCGCUgUa-CaaCGgCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.