miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11440 3' -57.4 NC_003085.1 + 10068 0.66 0.620461
Target:  5'- ---aGCCUgGAGgcgaaGAgGUUGGCGCCg -3'
miRNA:   3'- gcagCGGAgCUUa----CUgCAGCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 27867 0.66 0.609642
Target:  5'- uCG-CGCCaCGcAUGAUGUCGGCcauGCCc -3'
miRNA:   3'- -GCaGCGGaGCuUACUGCAGCCG---CGGa -5'
11440 3' -57.4 NC_003085.1 + 25700 0.66 0.605319
Target:  5'- uGcCGCUUCGAGgcugccucucaccGACGuguccuUCGGCGCCa -3'
miRNA:   3'- gCaGCGGAGCUUa------------CUGC------AGCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 19199 0.66 0.598842
Target:  5'- aCGUcCGCCUgGGGcGGCGggggcugGGCGCCg -3'
miRNA:   3'- -GCA-GCGGAgCUUaCUGCag-----CCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 35917 0.66 0.577333
Target:  5'- -cUCGCCUCGGuGUGAaccCGUCGGgGUa- -3'
miRNA:   3'- gcAGCGGAGCU-UACU---GCAGCCgCGga -5'
11440 3' -57.4 NC_003085.1 + 22884 0.66 0.577333
Target:  5'- uGUCGCCgcCGGAcuccgGuGCGUCGGCGUUc -3'
miRNA:   3'- gCAGCGGa-GCUUa----C-UGCAGCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 699 0.66 0.577333
Target:  5'- aGUCGCCaCGGGgcaacuccGCGU-GGCGCCUg -3'
miRNA:   3'- gCAGCGGaGCUUac------UGCAgCCGCGGA- -5'
11440 3' -57.4 NC_003085.1 + 28638 0.66 0.56664
Target:  5'- gGUCGCCUCauccaGGAUGGCGUccacccCGGCaaCCUc -3'
miRNA:   3'- gCAGCGGAG-----CUUACUGCA------GCCGc-GGA- -5'
11440 3' -57.4 NC_003085.1 + 48828 0.67 0.555999
Target:  5'- aG-CGCCUCGAc-GAgGUCcGCGCCa -3'
miRNA:   3'- gCaGCGGAGCUuaCUgCAGcCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 11762 0.67 0.545416
Target:  5'- aCG-CGUCUaCGAcgGuACGgCGGCGCCg -3'
miRNA:   3'- -GCaGCGGA-GCUuaC-UGCaGCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 27487 0.67 0.544361
Target:  5'- uCGUCgGCCUgUGGAacugGACGUacgacggCGGCGCCg -3'
miRNA:   3'- -GCAG-CGGA-GCUUa---CUGCA-------GCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 20317 0.67 0.544361
Target:  5'- aCGUCGCCUgCGAGUaGGCGgacucaaUCGccugguuccGCGCCg -3'
miRNA:   3'- -GCAGCGGA-GCUUA-CUGC-------AGC---------CGCGGa -5'
11440 3' -57.4 NC_003085.1 + 27082 0.67 0.534899
Target:  5'- --cCGUCUCGGGguuggGGCGguacacguagCGGCGCCUc -3'
miRNA:   3'- gcaGCGGAGCUUa----CUGCa---------GCCGCGGA- -5'
11440 3' -57.4 NC_003085.1 + 32414 0.67 0.534899
Target:  5'- uCGaCGcCCUCGAAgcuccgGAgGUUGGCGUCa -3'
miRNA:   3'- -GCaGC-GGAGCUUa-----CUgCAGCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 12334 0.67 0.524454
Target:  5'- cCGUCGCCgugcccGGCGUgaCGGUGCCa -3'
miRNA:   3'- -GCAGCGGagcuuaCUGCA--GCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 44081 0.67 0.514088
Target:  5'- gCGUagGCCUCGAcgGUGACGggacCGgacGCGCCg -3'
miRNA:   3'- -GCAg-CGGAGCU--UACUGCa---GC---CGCGGa -5'
11440 3' -57.4 NC_003085.1 + 45969 0.68 0.493615
Target:  5'- gCGUCGCCUUGg--GGCGgcagaUGcGCGCCUc -3'
miRNA:   3'- -GCAGCGGAGCuuaCUGCa----GC-CGCGGA- -5'
11440 3' -57.4 NC_003085.1 + 26704 0.68 0.490576
Target:  5'- ---gGCaCUCGAgcgcgcgcagggcgGUGACGgcgCGGCGCCg -3'
miRNA:   3'- gcagCG-GAGCU--------------UACUGCa--GCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 22721 0.68 0.483519
Target:  5'- gGcCGCCggUUGAGUGACagcacCGGCGCCg -3'
miRNA:   3'- gCaGCGG--AGCUUACUGca---GCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 33097 0.68 0.483519
Target:  5'- cCG-CGCCUgGAAUG-CcUCGGUGCCc -3'
miRNA:   3'- -GCaGCGGAgCUUACuGcAGCCGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.