miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11440 5' -55.4 NC_003085.1 + 10632 0.66 0.69652
Target:  5'- gGGAcGACGCggCAGUGCGCCCUgcucacacgccUGGCu -3'
miRNA:   3'- -UCU-CUGCGaaGUUGCGCGGGA-----------GCUGu -5'
11440 5' -55.4 NC_003085.1 + 9772 0.66 0.69652
Target:  5'- cGAGcuucacaaGCGCUUCGACGCaCUC-CGACu -3'
miRNA:   3'- uCUC--------UGCGAAGUUGCGcGGGaGCUGu -5'
11440 5' -55.4 NC_003085.1 + 23318 0.66 0.69652
Target:  5'- uGGAGAUGCUU-GACGCcGCUCUggcCGGCc -3'
miRNA:   3'- -UCUCUGCGAAgUUGCG-CGGGA---GCUGu -5'
11440 5' -55.4 NC_003085.1 + 5419 0.66 0.685571
Target:  5'- gAGGGGCGCgUC-ACGCuGCgCUCGGuCAu -3'
miRNA:   3'- -UCUCUGCGaAGuUGCG-CGgGAGCU-GU- -5'
11440 5' -55.4 NC_003085.1 + 2430 0.66 0.68557
Target:  5'- aAGAcGCGCUgcccuacccugCAACGCGCCgUCGuCu -3'
miRNA:   3'- -UCUcUGCGAa----------GUUGCGCGGgAGCuGu -5'
11440 5' -55.4 NC_003085.1 + 20580 0.66 0.68557
Target:  5'- uGAGACGCcugCGAC-UGCUgCUCGGCAg -3'
miRNA:   3'- uCUCUGCGaa-GUUGcGCGG-GAGCUGU- -5'
11440 5' -55.4 NC_003085.1 + 2990 0.66 0.674569
Target:  5'- --cGACGCUUC-AC-CGCCCUUGGu- -3'
miRNA:   3'- ucuCUGCGAAGuUGcGCGGGAGCUgu -5'
11440 5' -55.4 NC_003085.1 + 20071 0.66 0.674569
Target:  5'- cGGGAcaucCGCUUCcACGCGCgCUgUGACGu -3'
miRNA:   3'- uCUCU----GCGAAGuUGCGCGgGA-GCUGU- -5'
11440 5' -55.4 NC_003085.1 + 7643 0.66 0.663527
Target:  5'- uGGGGCGCUUgGGCG-GCgC-CGACAu -3'
miRNA:   3'- uCUCUGCGAAgUUGCgCGgGaGCUGU- -5'
11440 5' -55.4 NC_003085.1 + 24329 0.66 0.663527
Target:  5'- ---cGCGCUUCGugGUGCCCgCGuACu -3'
miRNA:   3'- ucucUGCGAAGUugCGCGGGaGC-UGu -5'
11440 5' -55.4 NC_003085.1 + 5408 0.66 0.663527
Target:  5'- gAGGGugGCccUUCGA-GCGCUCUUGAg- -3'
miRNA:   3'- -UCUCugCG--AAGUUgCGCGGGAGCUgu -5'
11440 5' -55.4 NC_003085.1 + 30167 0.66 0.652454
Target:  5'- gGGAGAggaGCUUCuuGACGUGCUC-CGGCc -3'
miRNA:   3'- -UCUCUg--CGAAG--UUGCGCGGGaGCUGu -5'
11440 5' -55.4 NC_003085.1 + 34271 0.66 0.641364
Target:  5'- cAGGGACGUagCAGC-CGCCCUUGu-- -3'
miRNA:   3'- -UCUCUGCGaaGUUGcGCGGGAGCugu -5'
11440 5' -55.4 NC_003085.1 + 28034 0.66 0.641363
Target:  5'- cGGGGAUGaggUCGuucuGCGCGgCCUCgGACAg -3'
miRNA:   3'- -UCUCUGCga-AGU----UGCGCgGGAG-CUGU- -5'
11440 5' -55.4 NC_003085.1 + 35206 0.67 0.630264
Target:  5'- uGGGACGg--CAAUGCGCCCg-GACu -3'
miRNA:   3'- uCUCUGCgaaGUUGCGCGGGagCUGu -5'
11440 5' -55.4 NC_003085.1 + 35398 0.67 0.630263
Target:  5'- cGAGGCGCUcgCAGa-UGgCCUCGACGg -3'
miRNA:   3'- uCUCUGCGAa-GUUgcGCgGGAGCUGU- -5'
11440 5' -55.4 NC_003085.1 + 17665 0.67 0.623604
Target:  5'- gGGAGGCGCUggcgcugagaccgaCGACGCGgCCa-GGCAg -3'
miRNA:   3'- -UCUCUGCGAa-------------GUUGCGCgGGagCUGU- -5'
11440 5' -55.4 NC_003085.1 + 35733 0.67 0.619166
Target:  5'- -uGGGCgGCUUC-GCGUGaCCUCGACGg -3'
miRNA:   3'- ucUCUG-CGAAGuUGCGCgGGAGCUGU- -5'
11440 5' -55.4 NC_003085.1 + 48634 0.67 0.619166
Target:  5'- gAGAGACGCgcUCGACGa-CCUgcggCGGCAc -3'
miRNA:   3'- -UCUCUGCGa-AGUUGCgcGGGa---GCUGU- -5'
11440 5' -55.4 NC_003085.1 + 45594 0.67 0.608079
Target:  5'- -cAGACgGCg--GGCGCGCCgUCGACGc -3'
miRNA:   3'- ucUCUG-CGaagUUGCGCGGgAGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.