miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11441 5' -58.6 NC_003085.1 + 20334 0.68 0.405745
Target:  5'- gGAUgaACUCUgggCCaCGGCGCC-UCAGCg -3'
miRNA:   3'- gCUG--UGGGAa--GGaGCCGCGGcAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 27997 0.68 0.405745
Target:  5'- aGGcCGCCC-UUgUCGGCGaaCGUCAGCc -3'
miRNA:   3'- gCU-GUGGGaAGgAGCCGCg-GCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 12222 0.68 0.405745
Target:  5'- gCGACGCCUg-CCUUGaGCGCgG-CGGCu -3'
miRNA:   3'- -GCUGUGGGaaGGAGC-CGCGgCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 37035 0.68 0.404841
Target:  5'- aCGACACagCC-UCCUCGGagcgcagcggcccCGCCGggucgagCAGCa -3'
miRNA:   3'- -GCUGUG--GGaAGGAGCC-------------GCGGCa------GUCG- -5'
11441 5' -58.6 NC_003085.1 + 48513 0.68 0.396766
Target:  5'- gCGACcUCCUU-CUCGGCGgCGagGGCg -3'
miRNA:   3'- -GCUGuGGGAAgGAGCCGCgGCagUCG- -5'
11441 5' -58.6 NC_003085.1 + 4669 0.68 0.387916
Target:  5'- aGGCgaGCCUUUCa-CGGCGCCGaguugcgccucgUCGGCg -3'
miRNA:   3'- gCUG--UGGGAAGgaGCCGCGGC------------AGUCG- -5'
11441 5' -58.6 NC_003085.1 + 11529 0.69 0.378332
Target:  5'- cCGAUucucaaucaacagGCCCUgcgCgUCGgaaagaagggcaGCGCCGUCGGCg -3'
miRNA:   3'- -GCUG-------------UGGGAa--GgAGC------------CGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 46429 0.69 0.37061
Target:  5'- uCGACAgCCUUCgcgugcaccguCUgGGCGUCGUCcguGCg -3'
miRNA:   3'- -GCUGUgGGAAG-----------GAgCCGCGGCAGu--CG- -5'
11441 5' -58.6 NC_003085.1 + 6745 0.69 0.37061
Target:  5'- cCGACGCCCacgCCUgaGGUGCCG-CcGCu -3'
miRNA:   3'- -GCUGUGGGaa-GGAg-CCGCGGCaGuCG- -5'
11441 5' -58.6 NC_003085.1 + 39145 0.69 0.353839
Target:  5'- uGACGCCCUggcaaagggCUaCGGCGUCGUCuGg -3'
miRNA:   3'- gCUGUGGGAa--------GGaGCCGCGGCAGuCg -5'
11441 5' -58.6 NC_003085.1 + 26948 0.69 0.353839
Target:  5'- gCGGCGCUucgugcggCUUCCgaugUCGGUGCCGUCcGUc -3'
miRNA:   3'- -GCUGUGG--------GAAGG----AGCCGCGGCAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 8669 0.69 0.337611
Target:  5'- gCGugGCCUUgggcgCCggGGUGCCGUCcGCc -3'
miRNA:   3'- -GCugUGGGAa----GGagCCGCGGCAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 6874 0.7 0.330487
Target:  5'- gGAUACCaCUUCCaCGGCGacauugaggccaucgCGUCAGCc -3'
miRNA:   3'- gCUGUGG-GAAGGaGCCGCg--------------GCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 45387 0.7 0.329702
Target:  5'- gGGCGCUCcaCCaggaggCGgaGCGCCGUCAGCg -3'
miRNA:   3'- gCUGUGGGaaGGa-----GC--CGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 22766 0.7 0.329702
Target:  5'- aCGACGCCCg-CCgCGGUGgCGaCGGCa -3'
miRNA:   3'- -GCUGUGGGaaGGaGCCGCgGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 9973 0.7 0.314298
Target:  5'- cCGGCuuCCgagcgCCUCGacGCGCaCGUCGGCa -3'
miRNA:   3'- -GCUGugGGaa---GGAGC--CGCG-GCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 8724 0.7 0.311283
Target:  5'- gGACACCUccagugCCUcCGGCGCCGgcgagagguccacCGGCg -3'
miRNA:   3'- gCUGUGGGaa----GGA-GCCGCGGCa------------GUCG- -5'
11441 5' -58.6 NC_003085.1 + 43256 0.7 0.30606
Target:  5'- gGugACCCacuggaguagguaUUUgUCGGCaCCGUCGGCa -3'
miRNA:   3'- gCugUGGG-------------AAGgAGCCGcGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 26110 0.7 0.299444
Target:  5'- gGGCugCg--CCUCGGCGgCCGgCGGCg -3'
miRNA:   3'- gCUGugGgaaGGAGCCGC-GGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 43352 0.7 0.292223
Target:  5'- --cCGCCCUUCg-CGGCGUCGUaGGCg -3'
miRNA:   3'- gcuGUGGGAAGgaGCCGCGGCAgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.