miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11442 3' -52.1 NC_003085.1 + 24560 0.66 0.880881
Target:  5'- ---cGCuGUUACUCGGCgaUGAGgcgGCCCu -3'
miRNA:   3'- ggaaCG-CAGUGAGCCGa-ACUU---UGGGc -5'
11442 3' -52.1 NC_003085.1 + 21574 0.66 0.85647
Target:  5'- gCCaUGacgaGUUGCUCGGUggGcuGCCCGg -3'
miRNA:   3'- -GGaACg---CAGUGAGCCGaaCuuUGGGC- -5'
11442 3' -52.1 NC_003085.1 + 27805 0.67 0.829857
Target:  5'- cCCgcGCGUCGCUCccgGGCUgGAGuaugcaacuccACCCa -3'
miRNA:   3'- -GGaaCGCAGUGAG---CCGAaCUU-----------UGGGc -5'
11442 3' -52.1 NC_003085.1 + 9726 0.67 0.820539
Target:  5'- gCCUgUGUGUC-CUCGGCgucaUGGAGUCCa -3'
miRNA:   3'- -GGA-ACGCAGuGAGCCGa---ACUUUGGGc -5'
11442 3' -52.1 NC_003085.1 + 2630 0.67 0.820539
Target:  5'- gCUgGCGUCgcaACUCGGCggcgaggUGAugccGCCCa -3'
miRNA:   3'- gGAaCGCAG---UGAGCCGa------ACUu---UGGGc -5'
11442 3' -52.1 NC_003085.1 + 16228 0.67 0.820539
Target:  5'- gCCggGC-UCAa-CGGCUcaUGGAGCCCGg -3'
miRNA:   3'- -GGaaCGcAGUgaGCCGA--ACUUUGGGC- -5'
11442 3' -52.1 NC_003085.1 + 49286 0.68 0.750154
Target:  5'- cCCUguggcugcUGCGUCGCgUCGGCgu----CCCGg -3'
miRNA:   3'- -GGA--------ACGCAGUG-AGCCGaacuuuGGGC- -5'
11442 3' -52.1 NC_003085.1 + 22719 0.7 0.671406
Target:  5'- cCCUggcgGCGgcugccgagaagCACUCGGCUccGAcACCCGc -3'
miRNA:   3'- -GGAa---CGCa-----------GUGAGCCGAa-CUuUGGGC- -5'
11442 3' -52.1 NC_003085.1 + 42832 0.7 0.639996
Target:  5'- aCCUUGCGcUCACguccggcgcCGGaCUUGAGgACCCc -3'
miRNA:   3'- -GGAACGC-AGUGa--------GCC-GAACUU-UGGGc -5'
11442 3' -52.1 NC_003085.1 + 35911 0.71 0.595079
Target:  5'- gCCUUGC-UCGcCUCGGUgUGA-ACCCGu -3'
miRNA:   3'- -GGAACGcAGU-GAGCCGaACUuUGGGC- -5'
11442 3' -52.1 NC_003085.1 + 35255 0.72 0.550678
Target:  5'- gCUUGCG-CGCg-GGCUUGucgcAGCCCGg -3'
miRNA:   3'- gGAACGCaGUGagCCGAACu---UUGGGC- -5'
11442 3' -52.1 NC_003085.1 + 34859 0.72 0.507344
Target:  5'- uCCgaGCagaaUCGCUCGGUgaaUGAGACCCGc -3'
miRNA:   3'- -GGaaCGc---AGUGAGCCGa--ACUUUGGGC- -5'
11442 3' -52.1 NC_003085.1 + 32738 1.11 0.001614
Target:  5'- uCCUUGCGUCACUCGGCUUGAAACCCGu -3'
miRNA:   3'- -GGAACGCAGUGAGCCGAACUUUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.