Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 8681 | 0.66 | 0.765759 |
Target: 5'- --gCGCCGGGGUgccguccgCCaACGUCAGccacACGa -3' miRNA: 3'- cgaGCGGUCCCAa-------GG-UGCAGUU----UGCa -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 31310 | 0.66 | 0.796044 |
Target: 5'- cGCUucuucCGCCucGGGUccgucaccuugUCCGCG-CGGACGUa -3' miRNA: 3'- -CGA-----GCGGu-CCCA-----------AGGUGCaGUUUGCA- -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 25240 | 0.66 | 0.796043 |
Target: 5'- cGC-CGCCcuGGUgcgcUCCGCGgCGGGCGUc -3' miRNA: 3'- -CGaGCGGucCCA----AGGUGCaGUUUGCA- -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 22915 | 0.66 | 0.783096 |
Target: 5'- gGCU-GCCGGGGcgaagcccuccgaggCCGCGUCGAcggcGCGg -3' miRNA: 3'- -CGAgCGGUCCCaa-------------GGUGCAGUU----UGCa -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 45939 | 0.67 | 0.712613 |
Target: 5'- -gUCGCCAcGGG-UCCGCGUaGAGCu- -3' miRNA: 3'- cgAGCGGU-CCCaAGGUGCAgUUUGca -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 7583 | 0.67 | 0.744841 |
Target: 5'- cGCUgCGUCAGGGcuaCACGUCGGcgcaccGCGa -3' miRNA: 3'- -CGA-GCGGUCCCaagGUGCAGUU------UGCa -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 39052 | 0.67 | 0.701692 |
Target: 5'- uUUCGCCuGGGGUuuucauagcgugUCCACGUCuccuucGCGg -3' miRNA: 3'- cGAGCGG-UCCCA------------AGGUGCAGuu----UGCa -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 12319 | 0.67 | 0.690701 |
Target: 5'- --cCGCCAGGGUgcCCGcCGUCGccgugcccGGCGUg -3' miRNA: 3'- cgaGCGGUCCCAa-GGU-GCAGU--------UUGCA- -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 36502 | 0.7 | 0.514137 |
Target: 5'- aGCUCuGCCGGGGccUUCCggacGCGgcgCGGACGg -3' miRNA: 3'- -CGAG-CGGUCCC--AAGG----UGCa--GUUUGCa -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 29913 | 0.7 | 0.53561 |
Target: 5'- gGUUCuCCAGGuucUCCGCGUCGGGCGc -3' miRNA: 3'- -CGAGcGGUCCca-AGGUGCAGUUUGCa -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 7482 | 0.71 | 0.503532 |
Target: 5'- --aCGCUGGaGGUgacgggcgUCCGCGUCGAGCGg -3' miRNA: 3'- cgaGCGGUC-CCA--------AGGUGCAGUUUGCa -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 48257 | 0.72 | 0.413024 |
Target: 5'- cGCggCGCCGGGGUgaggUugGUCAAugGUc -3' miRNA: 3'- -CGa-GCGGUCCCAag--GugCAGUUugCA- -5' |
|||||||
11443 | 3' | -53.7 | NC_003085.1 | + | 32124 | 1.09 | 0.001384 |
Target: 5'- gGCUCGCCAGGGUUCCACGUCAAACGUc -3' miRNA: 3'- -CGAGCGGUCCCAAGGUGCAGUUUGCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home