miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11443 5' -55.2 NC_003085.1 + 3516 0.67 0.626905
Target:  5'- uGGCGUCUCGCGaGCGUCauugAGgAGUGc -3'
miRNA:   3'- gCUGCAGAGUGCgUGUAGg---UCgUCGC- -5'
11443 5' -55.2 NC_003085.1 + 33547 0.67 0.626905
Target:  5'- aCGcCGUC-CACGCACGacggaCCAugcGCGGCGa -3'
miRNA:   3'- -GCuGCAGaGUGCGUGUa----GGU---CGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 19317 0.67 0.626905
Target:  5'- uGACGUCcUGCGUgggcuGCuggggCCGGCGGCGg -3'
miRNA:   3'- gCUGCAGaGUGCG-----UGua---GGUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 45952 0.67 0.626905
Target:  5'- uGACG-CUCGCGagACG-CCAGaCGGCGa -3'
miRNA:   3'- gCUGCaGAGUGCg-UGUaGGUC-GUCGC- -5'
11443 5' -55.2 NC_003085.1 + 36357 0.67 0.615841
Target:  5'- -cGCG-CUCACGCACcUCagcGCGGCGu -3'
miRNA:   3'- gcUGCaGAGUGCGUGuAGgu-CGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 23578 0.67 0.615841
Target:  5'- gCGAUGUCgcuggaggaCGCGUACaAUCgAGCGGUGa -3'
miRNA:   3'- -GCUGCAGa--------GUGCGUG-UAGgUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 32240 0.67 0.615841
Target:  5'- gGGCG-C-CGCGUGCucaCCAGCGGCGc -3'
miRNA:   3'- gCUGCaGaGUGCGUGua-GGUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 43444 0.68 0.593765
Target:  5'- gCGGCGUCcggGCGUACAUCCGcGCccagccguaGGCGa -3'
miRNA:   3'- -GCUGCAGag-UGCGUGUAGGU-CG---------UCGC- -5'
11443 5' -55.2 NC_003085.1 + 20930 0.68 0.571821
Target:  5'- gGACGUCcuauggagcccCGCGCGCGUCUgcacgAGguGCGg -3'
miRNA:   3'- gCUGCAGa----------GUGCGUGUAGG-----UCguCGC- -5'
11443 5' -55.2 NC_003085.1 + 36864 0.68 0.569636
Target:  5'- gGGCG-C-CACGCGCGUCagucggaccacgAGCAGCGg -3'
miRNA:   3'- gCUGCaGaGUGCGUGUAGg-----------UCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 46454 0.68 0.560919
Target:  5'- gGGCGUCgUC-CGUGCGcCCAGCGGgGa -3'
miRNA:   3'- gCUGCAG-AGuGCGUGUaGGUCGUCgC- -5'
11443 5' -55.2 NC_003085.1 + 40385 0.68 0.550075
Target:  5'- uGACGcCUCugGCGCuggCCGGCAu-- -3'
miRNA:   3'- gCUGCaGAGugCGUGua-GGUCGUcgc -5'
11443 5' -55.2 NC_003085.1 + 7904 0.69 0.539297
Target:  5'- uGGCGUCggggCGaGCGCGUCCuGuCGGCGu -3'
miRNA:   3'- gCUGCAGa---GUgCGUGUAGGuC-GUCGC- -5'
11443 5' -55.2 NC_003085.1 + 48363 0.69 0.528591
Target:  5'- cCGAgUGaCUCACGCGCGcUCCugagcGCGGCGa -3'
miRNA:   3'- -GCU-GCaGAGUGCGUGU-AGGu----CGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 20736 0.69 0.517965
Target:  5'- -uGCGUCUCACggaagccgaaGCGCAgggCCAGCGcGCa -3'
miRNA:   3'- gcUGCAGAGUG----------CGUGUa--GGUCGU-CGc -5'
11443 5' -55.2 NC_003085.1 + 29534 0.69 0.496977
Target:  5'- -aGCGUCUuggCGCGgGCGUCguGCGGCa -3'
miRNA:   3'- gcUGCAGA---GUGCgUGUAGguCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 45244 0.69 0.496977
Target:  5'- uGACG-CUCAgcguaacccgcCGCGCGU-CAGCGGCGu -3'
miRNA:   3'- gCUGCaGAGU-----------GCGUGUAgGUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 23681 0.69 0.496977
Target:  5'- aGGCGUC-CACGCAgCGggcCCGcGCAGCa -3'
miRNA:   3'- gCUGCAGaGUGCGU-GUa--GGU-CGUCGc -5'
11443 5' -55.2 NC_003085.1 + 8398 0.69 0.496977
Target:  5'- cCGAC-UCUCGCGUcugaGCAUCCgcuGGCAGUu -3'
miRNA:   3'- -GCUGcAGAGUGCG----UGUAGG---UCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 42814 0.69 0.496977
Target:  5'- uGAUGUCUUGCaCGgGUCCGGCgcuGGCGg -3'
miRNA:   3'- gCUGCAGAGUGcGUgUAGGUCG---UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.