Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11444 | 3' | -58.2 | NC_003085.1 | + | 32009 | 1.08 | 0.000494 |
Target: 5'- cCAGUACGAGCGCCGGGACUCGCCAUGg -3' miRNA: 3'- -GUCAUGCUCGCGGCCCUGAGCGGUAC- -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 11545 | 0.78 | 0.096606 |
Target: 5'- -cGU-CGAGCGCCGGGGCcaugCGCCAa- -3' miRNA: 3'- guCAuGCUCGCGGCCCUGa---GCGGUac -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 12018 | 0.72 | 0.23639 |
Target: 5'- gCGGUgGCGGGCGCgGGGuuggcGCUCGCUAg- -3' miRNA: 3'- -GUCA-UGCUCGCGgCCC-----UGAGCGGUac -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 14075 | 0.71 | 0.275363 |
Target: 5'- --cUGCGAGCGCCucGGACUcCGCCGg- -3' miRNA: 3'- gucAUGCUCGCGGc-CCUGA-GCGGUac -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 4113 | 0.7 | 0.319308 |
Target: 5'- gAGUugGGcgccGCGCUGGGACUccagCGCCGc- -3' miRNA: 3'- gUCAugCU----CGCGGCCCUGA----GCGGUac -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 10760 | 0.7 | 0.319308 |
Target: 5'- ---cACGGGCGCCGGGAagaCGCUggGg -3' miRNA: 3'- gucaUGCUCGCGGCCCUga-GCGGuaC- -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 45772 | 0.69 | 0.335082 |
Target: 5'- cCGG-ACGcGGCGUCaGGACUCGCCGc- -3' miRNA: 3'- -GUCaUGC-UCGCGGcCCUGAGCGGUac -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 45381 | 0.69 | 0.359795 |
Target: 5'- gAGUGCGGGCGCUccaccaGGaGGCggagCGCCGUc -3' miRNA: 3'- gUCAUGCUCGCGG------CC-CUGa---GCGGUAc -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 42677 | 0.69 | 0.368311 |
Target: 5'- -cGUGCGGGC-CCGGuACUCGUCAa- -3' miRNA: 3'- guCAUGCUCGcGGCCcUGAGCGGUac -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 31157 | 0.69 | 0.376964 |
Target: 5'- uCGG-ACGgccAGCGCCGGGGCgugcacCGCCcgGu -3' miRNA: 3'- -GUCaUGC---UCGCGGCCCUGa-----GCGGuaC- -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 20927 | 0.69 | 0.376964 |
Target: 5'- gUAGgcgACGA-CGCCGcGGAUUCGCCcUGa -3' miRNA: 3'- -GUCa--UGCUcGCGGC-CCUGAGCGGuAC- -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 42726 | 0.68 | 0.422232 |
Target: 5'- uCAGgcgUGGGCGUCGGGGCgaugcgggCGCgGUGg -3' miRNA: 3'- -GUCau-GCUCGCGGCCCUGa-------GCGgUAC- -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 26096 | 0.67 | 0.441232 |
Target: 5'- gGGU-CGaAGUGCUGGGGCUgCGCCu-- -3' miRNA: 3'- gUCAuGC-UCGCGGCCCUGA-GCGGuac -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 40026 | 0.67 | 0.470615 |
Target: 5'- ---cAUGAGCGCCGGcACguccgCGUCGUGg -3' miRNA: 3'- gucaUGCUCGCGGCCcUGa----GCGGUAC- -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 13908 | 0.67 | 0.490747 |
Target: 5'- cCGGUGCGGcguGCGCgcguuucggaCGGGGCgcgCGCCGa- -3' miRNA: 3'- -GUCAUGCU---CGCG----------GCCCUGa--GCGGUac -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 16041 | 0.66 | 0.511269 |
Target: 5'- --uUGCGGGCGagguaUGGGACgugCGCCAc- -3' miRNA: 3'- gucAUGCUCGCg----GCCCUGa--GCGGUac -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 45593 | 0.66 | 0.532138 |
Target: 5'- aCAGacgGCGGgcGCGCCGucGACgCGCCGUGg -3' miRNA: 3'- -GUCa--UGCU--CGCGGCc-CUGaGCGGUAC- -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 8647 | 0.66 | 0.542689 |
Target: 5'- aGGUACaGGCcgGCCGGGACgCG-CGUGg -3' miRNA: 3'- gUCAUGcUCG--CGGCCCUGaGCgGUAC- -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 32849 | 0.66 | 0.542689 |
Target: 5'- gAGgcCGcGCGCCgcGGGAC-CGCCcgGg -3' miRNA: 3'- gUCauGCuCGCGG--CCCUGaGCGGuaC- -5' |
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11444 | 3' | -58.2 | NC_003085.1 | + | 40708 | 0.66 | 0.542689 |
Target: 5'- gGGUGCugGAcGCGCCGGuGGaccuCUCGCCGg- -3' miRNA: 3'- gUCAUG--CU-CGCGGCC-CU----GAGCGGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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