Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 1792 | 0.66 | 0.393833 |
Target: 5'- -aCAGGUGGCcCGUUggCUGGCCgGGa- -3' miRNA: 3'- uaGUCCGCCGuGUAG--GACCGGaCCag -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 18122 | 0.7 | 0.217107 |
Target: 5'- -gCGGGCGGgACggCC-GGCCUGGg- -3' miRNA: 3'- uaGUCCGCCgUGuaGGaCCGGACCag -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 18296 | 0.66 | 0.367307 |
Target: 5'- -cCGGGCGGUGCAcgCCccGGCgCUGGcCg -3' miRNA: 3'- uaGUCCGCCGUGUa-GGa-CCG-GACCaG- -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 19893 | 0.67 | 0.342035 |
Target: 5'- cAUgAGGCcGCcgaagACGUCCgcguUGGCCUGGUUg -3' miRNA: 3'- -UAgUCCGcCG-----UGUAGG----ACCGGACCAG- -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 20617 | 0.68 | 0.260337 |
Target: 5'- aGUCGGGCGGCGCGggugcuugcuUCCccaUGGCCUa--- -3' miRNA: 3'- -UAGUCCGCCGUGU----------AGG---ACCGGAccag -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 21877 | 0.66 | 0.367307 |
Target: 5'- --aAGGUGGC-CGaaCUGGCCgGGUCc -3' miRNA: 3'- uagUCCGCCGuGUagGACCGGaCCAG- -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 25157 | 0.66 | 0.376011 |
Target: 5'- gGUguGGcCGGCGa--CCgUGGCCUGGUg -3' miRNA: 3'- -UAguCC-GCCGUguaGG-ACCGGACCAg -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 30051 | 0.68 | 0.273916 |
Target: 5'- -cCAGGUGGCGCcgCCcugGGCCUugcuggGGUa -3' miRNA: 3'- uaGUCCGCCGUGuaGGa--CCGGA------CCAg -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 32045 | 1.06 | 0.000357 |
Target: 5'- aAUCAGGCGGCACAUCCUGGCCUGGUCc -3' miRNA: 3'- -UAGUCCGCCGUGUAGGACCGGACCAG- -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 36452 | 0.66 | 0.367307 |
Target: 5'- --aGGGCGGCGCcUCaUGGCgaGGUa -3' miRNA: 3'- uagUCCGCCGUGuAGgACCGgaCCAg -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 43541 | 0.67 | 0.311096 |
Target: 5'- --aAGGCGGCGCGUCCagcuugcgcgagauaGGCCcGcGUCa -3' miRNA: 3'- uagUCCGCCGUGUAGGa--------------CCGGaC-CAG- -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 44442 | 0.66 | 0.376011 |
Target: 5'- cUCGGGCGuCGuCGUCUUcucGGCCUGcGUCg -3' miRNA: 3'- uAGUCCGCcGU-GUAGGA---CCGGAC-CAG- -5' |
|||||||
11444 | 5' | -60.2 | NC_003085.1 | + | 48656 | 0.69 | 0.222885 |
Target: 5'- ---cGGCGGCACgcggacGUCCaccgUGGCCUGGg- -3' miRNA: 3'- uaguCCGCCGUG------UAGG----ACCGGACCag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home