miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11445 5' -59 NC_003085.1 + 17122 0.66 0.487021
Target:  5'- gACgCCUaCCaggagGCAcugGACGGCGUCUGCu -3'
miRNA:   3'- -UGaGGGaGGga---CGU---UUGCCGCGGACG- -5'
11445 5' -59 NC_003085.1 + 14663 0.66 0.487021
Target:  5'- gGCUCCCgCCCacugaaccGCucgucguACuGCGCCUGCc -3'
miRNA:   3'- -UGAGGGaGGGa-------CGuu-----UGcCGCGGACG- -5'
11445 5' -59 NC_003085.1 + 37513 0.66 0.476927
Target:  5'- cGC-CCCUCCUUcacgccCAGGCGGCGaCCaaaUGCg -3'
miRNA:   3'- -UGaGGGAGGGAc-----GUUUGCCGC-GG---ACG- -5'
11445 5' -59 NC_003085.1 + 38087 0.66 0.476927
Target:  5'- cGCUCCa-CCCacuUGCuGACGGUGuCCUGg -3'
miRNA:   3'- -UGAGGgaGGG---ACGuUUGCCGC-GGACg -5'
11445 5' -59 NC_003085.1 + 12647 0.66 0.47092
Target:  5'- cGCUgCCUCgCUGaaGAGCGugcgggacgaaguguGCGCCUGCc -3'
miRNA:   3'- -UGAgGGAGgGACg-UUUGC---------------CGCGGACG- -5'
11445 5' -59 NC_003085.1 + 15163 0.66 0.466938
Target:  5'- uACUgCCCcCUCUGCGcuGACGGC-CCgGCu -3'
miRNA:   3'- -UGA-GGGaGGGACGU--UUGCCGcGGaCG- -5'
11445 5' -59 NC_003085.1 + 14757 0.66 0.466938
Target:  5'- cGC-CgCCguggCCaUGCAAcCGGCGCCUGUu -3'
miRNA:   3'- -UGaG-GGa---GGgACGUUuGCCGCGGACG- -5'
11445 5' -59 NC_003085.1 + 48379 0.66 0.466938
Target:  5'- cGCUCCUgagCgCgGCGAGCaGCGCC-GCa -3'
miRNA:   3'- -UGAGGGa--GgGaCGUUUGcCGCGGaCG- -5'
11445 5' -59 NC_003085.1 + 36906 0.66 0.465945
Target:  5'- -gUCCCagCCCgGCcAGCGGCGCggguggcaucccuCUGCc -3'
miRNA:   3'- ugAGGGa-GGGaCGuUUGCCGCG-------------GACG- -5'
11445 5' -59 NC_003085.1 + 35051 0.66 0.457057
Target:  5'- uACUCCCaucCCCUGgGAguuggggcccuaGCGG-GUCUGCc -3'
miRNA:   3'- -UGAGGGa--GGGACgUU------------UGCCgCGGACG- -5'
11445 5' -59 NC_003085.1 + 9693 0.66 0.457057
Target:  5'- gGCUggCgUCCCUGCAGACuGGagcgccggaaCGCCUGUg -3'
miRNA:   3'- -UGAg-GgAGGGACGUUUG-CC----------GCGGACG- -5'
11445 5' -59 NC_003085.1 + 2436 0.66 0.447291
Target:  5'- cGCUgCCCUaCCCUGC-AACG-CGCCg-- -3'
miRNA:   3'- -UGA-GGGA-GGGACGuUUGCcGCGGacg -5'
11445 5' -59 NC_003085.1 + 41994 0.66 0.447291
Target:  5'- cCUCgCCgugUUCCUGCcccGGCGGCGUCgGCa -3'
miRNA:   3'- uGAG-GG---AGGGACGu--UUGCCGCGGaCG- -5'
11445 5' -59 NC_003085.1 + 41312 0.66 0.437641
Target:  5'- gACUCgUUCgCCUGaugcGCGGCGCUUGa -3'
miRNA:   3'- -UGAGgGAG-GGACguu-UGCCGCGGACg -5'
11445 5' -59 NC_003085.1 + 19684 0.66 0.437641
Target:  5'- cCUCCUggcggCCCUGgAGgcgcGCGGCGgcaUCUGCa -3'
miRNA:   3'- uGAGGGa----GGGACgUU----UGCCGC---GGACG- -5'
11445 5' -59 NC_003085.1 + 27122 0.66 0.437641
Target:  5'- gGCaUCCCUCcauuccuggCCUGCGGauucAUGGCGCggGCa -3'
miRNA:   3'- -UG-AGGGAG---------GGACGUU----UGCCGCGgaCG- -5'
11445 5' -59 NC_003085.1 + 21534 0.67 0.428112
Target:  5'- cGCUgaCgUCCCUGCGugacuacCGGCGCgaGCu -3'
miRNA:   3'- -UGAg-GgAGGGACGUuu-----GCCGCGgaCG- -5'
11445 5' -59 NC_003085.1 + 2193 0.67 0.428112
Target:  5'- aACUCCUUCgaCgcgugGCGGACGGUgacGCCUGa -3'
miRNA:   3'- -UGAGGGAGg-Ga----CGUUUGCCG---CGGACg -5'
11445 5' -59 NC_003085.1 + 30589 0.67 0.428112
Target:  5'- --gUCCUCUC-GCGuuuCGGCGCCUcGCa -3'
miRNA:   3'- ugaGGGAGGGaCGUuu-GCCGCGGA-CG- -5'
11445 5' -59 NC_003085.1 + 22319 0.67 0.418706
Target:  5'- -gUCCCcgaaggugagCaCCUGC-GugGGCGUCUGCg -3'
miRNA:   3'- ugAGGGa---------G-GGACGuUugCCGCGGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.