miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11446 3' -56.4 NC_003085.1 + 2629 0.66 0.62304
Target:  5'- gCGCUGgcucccagcuacCCGCUUGggCCGugguGGCGUC-ACg -3'
miRNA:   3'- -GUGAC------------GGCGAACa-GGCu---CCGCAGaUG- -5'
11446 3' -56.4 NC_003085.1 + 8584 0.66 0.62304
Target:  5'- gGCaUGCCGCcgucGUCCGAGcGCGUg--- -3'
miRNA:   3'- gUG-ACGGCGaa--CAGGCUC-CGCAgaug -5'
11446 3' -56.4 NC_003085.1 + 27344 0.66 0.611964
Target:  5'- gGCUGCUGCggcgCCG-GGC-UCUGCu -3'
miRNA:   3'- gUGACGGCGaacaGGCuCCGcAGAUG- -5'
11446 3' -56.4 NC_003085.1 + 26691 0.66 0.600906
Target:  5'- cCGCUGCCGUcgccaCCGcggcGGGCGUCgucgGCg -3'
miRNA:   3'- -GUGACGGCGaaca-GGC----UCCGCAGa---UG- -5'
11446 3' -56.4 NC_003085.1 + 27756 0.66 0.589875
Target:  5'- gGC-GCUGgaUGUCCGAGGCGa---- -3'
miRNA:   3'- gUGaCGGCgaACAGGCUCCGCagaug -5'
11446 3' -56.4 NC_003085.1 + 18972 0.67 0.557033
Target:  5'- gGCUGUCGuCgaGUCC-AGGCGUCg-- -3'
miRNA:   3'- gUGACGGC-GaaCAGGcUCCGCAGaug -5'
11446 3' -56.4 NC_003085.1 + 30344 0.67 0.546196
Target:  5'- aCGCUGUCGCggGgcgcaCUGcGGCGUCUAg -3'
miRNA:   3'- -GUGACGGCGaaCa----GGCuCCGCAGAUg -5'
11446 3' -56.4 NC_003085.1 + 27694 0.67 0.535428
Target:  5'- uGCUGUCGC--GUCUG-GGCGUCcGCc -3'
miRNA:   3'- gUGACGGCGaaCAGGCuCCGCAGaUG- -5'
11446 3' -56.4 NC_003085.1 + 17996 0.67 0.535428
Target:  5'- uCACUGCCuCcUGUCCGAcGGCG-CgagGCc -3'
miRNA:   3'- -GUGACGGcGaACAGGCU-CCGCaGa--UG- -5'
11446 3' -56.4 NC_003085.1 + 45533 0.67 0.510958
Target:  5'- aCAUcGCCGCggcgcucggcuuccaGUUCGAGGCGUCgcaGCa -3'
miRNA:   3'- -GUGaCGGCGaa-------------CAGGCUCCGCAGa--UG- -5'
11446 3' -56.4 NC_003085.1 + 18247 0.68 0.482847
Target:  5'- aCAC-GCCGa-UGUCCGAGGCGa-UACc -3'
miRNA:   3'- -GUGaCGGCgaACAGGCUCCGCagAUG- -5'
11446 3' -56.4 NC_003085.1 + 15756 0.68 0.482847
Target:  5'- --aUGCCGCUgcaaUCGAGGCGUUUGa -3'
miRNA:   3'- gugACGGCGAaca-GGCUCCGCAGAUg -5'
11446 3' -56.4 NC_003085.1 + 35615 0.68 0.471609
Target:  5'- -gUUGCCGCacaUCCGGcacuucccugggcGGCGUCUGCa -3'
miRNA:   3'- guGACGGCGaacAGGCU-------------CCGCAGAUG- -5'
11446 3' -56.4 NC_003085.1 + 31393 1.08 0.000705
Target:  5'- cCACUGCCGCUUGUCCGAGGCGUCUACc -3'
miRNA:   3'- -GUGACGGCGAACAGGCUCCGCAGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.