miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11446 5' -53.9 NC_003085.1 + 1016 0.7 0.503532
Target:  5'- -gGUGGccuaugcucGCGGCCUCGccguccaugcggAGGAAGCcAGCg -3'
miRNA:   3'- agCAUC---------UGCCGGAGU------------UCCUUCGcUCG- -5'
11446 5' -53.9 NC_003085.1 + 3908 0.71 0.452059
Target:  5'- cUCGUGcugcGAC-GCCUCGAacuGGAAGcCGAGCg -3'
miRNA:   3'- -AGCAU----CUGcCGGAGUU---CCUUC-GCUCG- -5'
11446 5' -53.9 NC_003085.1 + 4391 0.66 0.77295
Target:  5'- gUUGUGGACGgcggauaccggacaGCCggcgGAGGAGGCuGGCg -3'
miRNA:   3'- -AGCAUCUGC--------------CGGag--UUCCUUCGcUCG- -5'
11446 5' -53.9 NC_003085.1 + 4570 0.68 0.635099
Target:  5'- cUCGUGGACuGCaauugcaaUCAAGGuuGCGAuuGCg -3'
miRNA:   3'- -AGCAUCUGcCGg-------AGUUCCuuCGCU--CG- -5'
11446 5' -53.9 NC_003085.1 + 4699 0.78 0.187641
Target:  5'- cUCGUcGGCGGacuaCCUCAccGAAGCGAGCg -3'
miRNA:   3'- -AGCAuCUGCC----GGAGUucCUUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 5806 0.66 0.7342
Target:  5'- uUCGUcGGAgCGGUgcgcaUCGGGGAGGCGucAGCc -3'
miRNA:   3'- -AGCA-UCU-GCCGg----AGUUCCUUCGC--UCG- -5'
11446 5' -53.9 NC_003085.1 + 7326 0.73 0.358549
Target:  5'- aUCGcggAGGCGGCU--GAGGAcGCGGGCu -3'
miRNA:   3'- -AGCa--UCUGCCGGagUUCCUuCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 7465 0.68 0.635099
Target:  5'- -gGUGGGCGucgcGCCUCAcgcuGGAGGUGAcggGCg -3'
miRNA:   3'- agCAUCUGC----CGGAGUu---CCUUCGCU---CG- -5'
11446 5' -53.9 NC_003085.1 + 7755 0.67 0.722374
Target:  5'- cCGaGGACGGCCgugucaucagccaUCGucGcGGCGAGCg -3'
miRNA:   3'- aGCaUCUGCCGG-------------AGUucCuUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 9359 0.67 0.723453
Target:  5'- cUGUGGACgcaGGCCgaCAAGGAAGgGcuGCu -3'
miRNA:   3'- aGCAUCUG---CCGGa-GUUCCUUCgCu-CG- -5'
11446 5' -53.9 NC_003085.1 + 9437 0.79 0.154659
Target:  5'- aCGUAGucCGGCC-CGuacGGGAAGCGGGCc -3'
miRNA:   3'- aGCAUCu-GCCGGaGU---UCCUUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 10169 0.66 0.786109
Target:  5'- gUCGUAGuugGCGagacaccgcagcGCCguaGAGGAGGCGcGCa -3'
miRNA:   3'- -AGCAUC---UGC------------CGGag-UUCCUUCGCuCG- -5'
11446 5' -53.9 NC_003085.1 + 11285 0.67 0.67965
Target:  5'- -aGUGGGCccGGCUUC--GGAAGCGcGCg -3'
miRNA:   3'- agCAUCUG--CCGGAGuuCCUUCGCuCG- -5'
11446 5' -53.9 NC_003085.1 + 13547 0.66 0.786109
Target:  5'- ----cGACGGgUUCAGcaccGAGGCGAGCa -3'
miRNA:   3'- agcauCUGCCgGAGUUc---CUUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 13831 0.66 0.786109
Target:  5'- aCGUgcAGACGccGCC-CAGGGAAGUGccggaugugcGGCa -3'
miRNA:   3'- aGCA--UCUGC--CGGaGUUCCUUCGC----------UCG- -5'
11446 5' -53.9 NC_003085.1 + 14383 0.74 0.333261
Target:  5'- gUCGcAGAUGGCC-CGGGaGAGGCGGGa -3'
miRNA:   3'- -AGCaUCUGCCGGaGUUC-CUUCGCUCg -5'
11446 5' -53.9 NC_003085.1 + 16124 0.66 0.786109
Target:  5'- cUCGUAGcAUGGCCUucCGGGGAAaCGGaacGCc -3'
miRNA:   3'- -AGCAUC-UGCCGGA--GUUCCUUcGCU---CG- -5'
11446 5' -53.9 NC_003085.1 + 18449 0.71 0.462129
Target:  5'- gUCGUGGACGuCCUgGAGG-AGCGcGUg -3'
miRNA:   3'- -AGCAUCUGCcGGAgUUCCuUCGCuCG- -5'
11446 5' -53.9 NC_003085.1 + 19345 0.66 0.755364
Target:  5'- gCGgcGGAUGGCgUCcguguaGAGGAGGCGgccGGCg -3'
miRNA:   3'- aGCa-UCUGCCGgAG------UUCCUUCGC---UCG- -5'
11446 5' -53.9 NC_003085.1 + 21628 0.69 0.612763
Target:  5'- gCGcgAGACGGCCauggCGcAGGggGUGAagGCg -3'
miRNA:   3'- aGCa-UCUGCCGGa---GU-UCCuuCGCU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.