miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11446 5' -53.9 NC_003085.1 + 9359 0.67 0.723453
Target:  5'- cUGUGGACgcaGGCCgaCAAGGAAGgGcuGCu -3'
miRNA:   3'- aGCAUCUG---CCGGa-GUUCCUUCgCu-CG- -5'
11446 5' -53.9 NC_003085.1 + 43756 0.67 0.723453
Target:  5'- -aGUAGACGGCCgagucccgccaUCGAGGGucAGCa--- -3'
miRNA:   3'- agCAUCUGCCGG-----------AGUUCCU--UCGcucg -5'
11446 5' -53.9 NC_003085.1 + 7755 0.67 0.722374
Target:  5'- cCGaGGACGGCCgugucaucagccaUCGucGcGGCGAGCg -3'
miRNA:   3'- aGCaUCUGCCGG-------------AGUucCuUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 35405 0.67 0.701692
Target:  5'- cUCGcAGAUGGCCUCGAcGGAcacgccgucGCGcAGUa -3'
miRNA:   3'- -AGCaUCUGCCGGAGUU-CCUu--------CGC-UCG- -5'
11446 5' -53.9 NC_003085.1 + 24357 0.67 0.701692
Target:  5'- gCGacgGGACGGCCUUu-GGcGGcCGGGCc -3'
miRNA:   3'- aGCa--UCUGCCGGAGuuCCuUC-GCUCG- -5'
11446 5' -53.9 NC_003085.1 + 11285 0.67 0.67965
Target:  5'- -aGUGGGCccGGCUUC--GGAAGCGcGCg -3'
miRNA:   3'- agCAUCUG--CCGGAGuuCCUUCGCuCG- -5'
11446 5' -53.9 NC_003085.1 + 25575 0.68 0.672998
Target:  5'- gCGUGGACGGCugcugccguucgCUCAcgccccgacgcgaauGGGGgcucaggaAGCGAGUg -3'
miRNA:   3'- aGCAUCUGCCG------------GAGU---------------UCCU--------UCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 48436 0.68 0.668555
Target:  5'- cCGcaUGGACGGC---GAGGccGCGAGCa -3'
miRNA:   3'- aGC--AUCUGCCGgagUUCCuuCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 31455 0.68 0.668555
Target:  5'- aCGU--ACGGCCUCGcgccgucggacAGGAGGCaguGAGUc -3'
miRNA:   3'- aGCAucUGCCGGAGU-----------UCCUUCG---CUCG- -5'
11446 5' -53.9 NC_003085.1 + 46009 0.68 0.646268
Target:  5'- -gGUGacGACGGCCgggCAGGGcaugucAGUGGGCu -3'
miRNA:   3'- agCAU--CUGCCGGa--GUUCCu-----UCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 7465 0.68 0.635099
Target:  5'- -gGUGGGCGucgcGCCUCAcgcuGGAGGUGAcggGCg -3'
miRNA:   3'- agCAUCUGC----CGGAGUu---CCUUCGCU---CG- -5'
11446 5' -53.9 NC_003085.1 + 4570 0.68 0.635099
Target:  5'- cUCGUGGACuGCaauugcaaUCAAGGuuGCGAuuGCg -3'
miRNA:   3'- -AGCAUCUGcCGg-------AGUUCCuuCGCU--CG- -5'
11446 5' -53.9 NC_003085.1 + 21628 0.69 0.612763
Target:  5'- gCGcgAGACGGCCauggCGcAGGggGUGAagGCg -3'
miRNA:   3'- aGCa-UCUGCCGGa---GU-UCCuuCGCU--CG- -5'
11446 5' -53.9 NC_003085.1 + 22585 0.69 0.612763
Target:  5'- gCGU-GugGGCCgCGGcGGAgaaaaAGCGGGCg -3'
miRNA:   3'- aGCAuCugCCGGaGUU-CCU-----UCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 1016 0.7 0.503532
Target:  5'- -gGUGGccuaugcucGCGGCCUCGccguccaugcggAGGAAGCcAGCg -3'
miRNA:   3'- agCAUC---------UGCCGGAGU------------UCCUUCGcUCG- -5'
11446 5' -53.9 NC_003085.1 + 42728 0.71 0.482616
Target:  5'- -aGgcGugGGCgUCGGGGcgauGCGGGCg -3'
miRNA:   3'- agCauCugCCGgAGUUCCuu--CGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 18449 0.71 0.462129
Target:  5'- gUCGUGGACGuCCUgGAGG-AGCGcGUg -3'
miRNA:   3'- -AGCAUCUGCcGGAgUUCCuUCGCuCG- -5'
11446 5' -53.9 NC_003085.1 + 3908 0.71 0.452059
Target:  5'- cUCGUGcugcGAC-GCCUCGAacuGGAAGcCGAGCg -3'
miRNA:   3'- -AGCAU----CUGcCGGAGUU---CCUUC-GCUCG- -5'
11446 5' -53.9 NC_003085.1 + 28029 0.72 0.394302
Target:  5'- aCGUGGACGGCgUCcuccugucGGAGcCGAGCg -3'
miRNA:   3'- aGCAUCUGCCGgAGuu------CCUUcGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 49039 0.73 0.376139
Target:  5'- cUCGUAGacGCGGCCgagacuggcgUCcAGGGAGCGcaGGCg -3'
miRNA:   3'- -AGCAUC--UGCCGG----------AGuUCCUUCGC--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.