Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11447 | 3' | -61 | NC_003085.1 | + | 30823 | 1.08 | 0.00031 |
Target: 5'- gCGCGGGGGCACGGCGAAACGCUCGGAg -3' miRNA: 3'- -GCGCCCCCGUGCCGCUUUGCGAGCCU- -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 26217 | 0.79 | 0.052328 |
Target: 5'- gCGCGGGcGGCGCGGUgcGAAGCGCggCGGc -3' miRNA: 3'- -GCGCCC-CCGUGCCG--CUUUGCGa-GCCu -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 19214 | 0.78 | 0.058527 |
Target: 5'- gGCGGGGGCugGGCGccGCGCaaGGc -3' miRNA: 3'- gCGCCCCCGugCCGCuuUGCGagCCu -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 32555 | 0.76 | 0.093718 |
Target: 5'- gGCGGGGGCugGgguGCGAGGuggcucauCGCUCGGc -3' miRNA: 3'- gCGCCCCCGugC---CGCUUU--------GCGAGCCu -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 32037 | 0.74 | 0.119727 |
Target: 5'- gCGCGGugauGGGgGCGGCGAGugGCcUGGGg -3' miRNA: 3'- -GCGCC----CCCgUGCCGCUUugCGaGCCU- -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 49157 | 0.74 | 0.119727 |
Target: 5'- uCGCGGGGGCAgCGGaCGggGa-CUCGGc -3' miRNA: 3'- -GCGCCCCCGU-GCC-GCuuUgcGAGCCu -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 2786 | 0.74 | 0.119727 |
Target: 5'- aGCGGcGGCgcuccaggcgGCGGCGAAGCGcCUCGGc -3' miRNA: 3'- gCGCCcCCG----------UGCCGCUUUGC-GAGCCu -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 12020 | 0.72 | 0.156407 |
Target: 5'- gGUGGcGGGCGCGGgGuuGGCGCUCGc- -3' miRNA: 3'- gCGCC-CCCGUGCCgCu-UUGCGAGCcu -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 48598 | 0.72 | 0.160589 |
Target: 5'- cCGcCGGGaaGGCGCGaGCGAuGCGCUUGGc -3' miRNA: 3'- -GC-GCCC--CCGUGC-CGCUuUGCGAGCCu -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 34187 | 0.72 | 0.17834 |
Target: 5'- aCGC--GGGCGCGGCGGGugaGCUCGGc -3' miRNA: 3'- -GCGccCCCGUGCCGCUUug-CGAGCCu -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 2470 | 0.7 | 0.23048 |
Target: 5'- aGCcuGGGGagaaGUugGGCGAAACGCUCa-- -3' miRNA: 3'- gCG--CCCC----CGugCCGCUUUGCGAGccu -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 288 | 0.7 | 0.235756 |
Target: 5'- aGCGGcGGCaggaccggGCGGCcuccgaccucaugGAGAUGCUCGGAg -3' miRNA: 3'- gCGCCcCCG--------UGCCG-------------CUUUGCGAGCCU- -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 10974 | 0.7 | 0.236349 |
Target: 5'- gGCGGauGCcCGGCGAGACGUUgGGGa -3' miRNA: 3'- gCGCCccCGuGCCGCUUUGCGAgCCU- -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 19058 | 0.7 | 0.242342 |
Target: 5'- cCGCGGc-GCGCGGCGGAgcagGCGC-CGGGc -3' miRNA: 3'- -GCGCCccCGUGCCGCUU----UGCGaGCCU- -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 7468 | 0.69 | 0.254707 |
Target: 5'- cCGCcGGGGCaggaacACGGCGAGGCGUgucacUgGGAa -3' miRNA: 3'- -GCGcCCCCG------UGCCGCUUUGCG-----AgCCU- -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 19334 | 0.69 | 0.259796 |
Target: 5'- uGCuGGGGCcgGCGGCGGAugGCguccguguagaGGAg -3' miRNA: 3'- gCGcCCCCG--UGCCGCUUugCGag---------CCU- -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 22629 | 0.69 | 0.274219 |
Target: 5'- gGCGGGGGCACacGCcuGGCGCgcaGGGg -3' miRNA: 3'- gCGCCCCCGUGc-CGcuUUGCGag-CCU- -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 31688 | 0.69 | 0.274219 |
Target: 5'- gGCGGGGGCccuUGGCuu--CGCUCaGGGu -3' miRNA: 3'- gCGCCCCCGu--GCCGcuuuGCGAG-CCU- -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 26105 | 0.69 | 0.287881 |
Target: 5'- uGCuGGGGCugcgccuCGGCGGccggcGGCGCUUGGc -3' miRNA: 3'- gCGcCCCCGu------GCCGCU-----UUGCGAGCCu -5' |
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11447 | 3' | -61 | NC_003085.1 | + | 22584 | 0.68 | 0.294911 |
Target: 5'- gGCGuGuGGGcCGCGGCGGAGaaaaaGCgggCGGAg -3' miRNA: 3'- gCGC-C-CCC-GUGCCGCUUUg----CGa--GCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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