miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11447 3' -61 NC_003085.1 + 28605 0.68 0.324361
Target:  5'- gGUGGGcGGCaccgcaGCGGCGAGcucgGCGC-CGGu -3'
miRNA:   3'- gCGCCC-CCG------UGCCGCUU----UGCGaGCCu -5'
11447 3' -61 NC_003085.1 + 13922 0.68 0.323598
Target:  5'- gCGCGuuucggacGGGGCGCGcgccgaagaagaaGCGGAGCG-UCGGAc -3'
miRNA:   3'- -GCGC--------CCCCGUGC-------------CGCUUUGCgAGCCU- -5'
11447 3' -61 NC_003085.1 + 5262 0.68 0.316798
Target:  5'- uGCGGGcGCGCGGCaguACGCgagcaCGGGc -3'
miRNA:   3'- gCGCCCcCGUGCCGcuuUGCGa----GCCU- -5'
11447 3' -61 NC_003085.1 + 22584 0.68 0.294911
Target:  5'- gGCGuGuGGGcCGCGGCGGAGaaaaaGCgggCGGAg -3'
miRNA:   3'- gCGC-C-CCC-GUGCCGCUUUg----CGa--GCCU- -5'
11447 3' -61 NC_003085.1 + 26105 0.69 0.287881
Target:  5'- uGCuGGGGCugcgccuCGGCGGccggcGGCGCUUGGc -3'
miRNA:   3'- gCGcCCCCGu------GCCGCU-----UUGCGAGCCu -5'
11447 3' -61 NC_003085.1 + 31688 0.69 0.274219
Target:  5'- gGCGGGGGCccuUGGCuu--CGCUCaGGGu -3'
miRNA:   3'- gCGCCCCCGu--GCCGcuuuGCGAG-CCU- -5'
11447 3' -61 NC_003085.1 + 22629 0.69 0.274219
Target:  5'- gGCGGGGGCACacGCcuGGCGCgcaGGGg -3'
miRNA:   3'- gCGCCCCCGUGc-CGcuUUGCGag-CCU- -5'
11447 3' -61 NC_003085.1 + 19334 0.69 0.259796
Target:  5'- uGCuGGGGCcgGCGGCGGAugGCguccguguagaGGAg -3'
miRNA:   3'- gCGcCCCCG--UGCCGCUUugCGag---------CCU- -5'
11447 3' -61 NC_003085.1 + 7468 0.69 0.254707
Target:  5'- cCGCcGGGGCaggaacACGGCGAGGCGUgucacUgGGAa -3'
miRNA:   3'- -GCGcCCCCG------UGCCGCUUUGCG-----AgCCU- -5'
11447 3' -61 NC_003085.1 + 19058 0.7 0.242342
Target:  5'- cCGCGGc-GCGCGGCGGAgcagGCGC-CGGGc -3'
miRNA:   3'- -GCGCCccCGUGCCGCUU----UGCGaGCCU- -5'
11447 3' -61 NC_003085.1 + 10974 0.7 0.236349
Target:  5'- gGCGGauGCcCGGCGAGACGUUgGGGa -3'
miRNA:   3'- gCGCCccCGuGCCGCUUUGCGAgCCU- -5'
11447 3' -61 NC_003085.1 + 288 0.7 0.235756
Target:  5'- aGCGGcGGCaggaccggGCGGCcuccgaccucaugGAGAUGCUCGGAg -3'
miRNA:   3'- gCGCCcCCG--------UGCCG-------------CUUUGCGAGCCU- -5'
11447 3' -61 NC_003085.1 + 2470 0.7 0.23048
Target:  5'- aGCcuGGGGagaaGUugGGCGAAACGCUCa-- -3'
miRNA:   3'- gCG--CCCC----CGugCCGCUUUGCGAGccu -5'
11447 3' -61 NC_003085.1 + 34187 0.72 0.17834
Target:  5'- aCGC--GGGCGCGGCGGGugaGCUCGGc -3'
miRNA:   3'- -GCGccCCCGUGCCGCUUug-CGAGCCu -5'
11447 3' -61 NC_003085.1 + 48598 0.72 0.160589
Target:  5'- cCGcCGGGaaGGCGCGaGCGAuGCGCUUGGc -3'
miRNA:   3'- -GC-GCCC--CCGUGC-CGCUuUGCGAGCCu -5'
11447 3' -61 NC_003085.1 + 12020 0.72 0.156407
Target:  5'- gGUGGcGGGCGCGGgGuuGGCGCUCGc- -3'
miRNA:   3'- gCGCC-CCCGUGCCgCu-UUGCGAGCcu -5'
11447 3' -61 NC_003085.1 + 32037 0.74 0.119727
Target:  5'- gCGCGGugauGGGgGCGGCGAGugGCcUGGGg -3'
miRNA:   3'- -GCGCC----CCCgUGCCGCUUugCGaGCCU- -5'
11447 3' -61 NC_003085.1 + 49157 0.74 0.119727
Target:  5'- uCGCGGGGGCAgCGGaCGggGa-CUCGGc -3'
miRNA:   3'- -GCGCCCCCGU-GCC-GCuuUgcGAGCCu -5'
11447 3' -61 NC_003085.1 + 2786 0.74 0.119727
Target:  5'- aGCGGcGGCgcuccaggcgGCGGCGAAGCGcCUCGGc -3'
miRNA:   3'- gCGCCcCCG----------UGCCGCUUUGC-GAGCCu -5'
11447 3' -61 NC_003085.1 + 32555 0.76 0.093718
Target:  5'- gGCGGGGGCugGgguGCGAGGuggcucauCGCUCGGc -3'
miRNA:   3'- gCGCCCCCGugC---CGCUUU--------GCGAGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.