miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11448 5' -55.4 NC_003085.1 + 29681 0.67 0.637905
Target:  5'- cGUCCACC-UCGCgACGugggaguaccUCcacgagccuggUCGUCGCu -3'
miRNA:   3'- cCAGGUGGaAGCGgUGC----------AG-----------AGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 43183 0.67 0.637905
Target:  5'- -cUCCACCgccgcgcgguacUUCGCgGCGUcCUCGUgcagCGCg -3'
miRNA:   3'- ccAGGUGG------------AAGCGgUGCA-GAGCA----GCG- -5'
11448 5' -55.4 NC_003085.1 + 27829 0.67 0.637905
Target:  5'- -cUUCACCcccugCGCCAuggcCGUCUCG-CGCg -3'
miRNA:   3'- ccAGGUGGaa---GCGGU----GCAGAGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 27980 0.68 0.605255
Target:  5'- aGUCCACCa-CGCCGCGcaggccgccCUUGUCGg -3'
miRNA:   3'- cCAGGUGGaaGCGGUGCa--------GAGCAGCg -5'
11448 5' -55.4 NC_003085.1 + 35821 0.68 0.605255
Target:  5'- -uUCCACCUgcUCGCCgagcgccuGCGaCUCaGUCGUg -3'
miRNA:   3'- ccAGGUGGA--AGCGG--------UGCaGAG-CAGCG- -5'
11448 5' -55.4 NC_003085.1 + 1511 0.68 0.604169
Target:  5'- cGGUgCGCCUcacggcCGCCaggcgugacuccaGCGUCUgcUGUCGCg -3'
miRNA:   3'- -CCAgGUGGAa-----GCGG-------------UGCAGA--GCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 40022 0.68 0.594405
Target:  5'- cGUCCAUgagCGCCggcACGUCcgCGUCGUg -3'
miRNA:   3'- cCAGGUGgaaGCGG---UGCAGa-GCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 28322 0.68 0.572807
Target:  5'- aGUCCACCUUCcgGCCGCc-CUUGUCcCa -3'
miRNA:   3'- cCAGGUGGAAG--CGGUGcaGAGCAGcG- -5'
11448 5' -55.4 NC_003085.1 + 24900 0.68 0.572807
Target:  5'- aGGgCCGCCUcaUCGCCgaguaacaGCG-CUCG-CGCa -3'
miRNA:   3'- -CCaGGUGGA--AGCGG--------UGCaGAGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 14108 0.69 0.563146
Target:  5'- aGGUCCACgagagugcucuuggUCGCUuuCGcCUCGUCGUa -3'
miRNA:   3'- -CCAGGUGga------------AGCGGu-GCaGAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 27696 0.69 0.562076
Target:  5'- cGUUCGCCUgggccagaaugcUCGCCACGUCguagUGCu -3'
miRNA:   3'- cCAGGUGGA------------AGCGGUGCAGagcaGCG- -5'
11448 5' -55.4 NC_003085.1 + 18896 0.69 0.554596
Target:  5'- aGGUCCACacgcucuacggcguaCGCCugGagUUGUCGCc -3'
miRNA:   3'- -CCAGGUGgaa------------GCGGugCagAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 8901 0.69 0.551399
Target:  5'- gGGUCCACCgcggcCGUCAcCGUgC-CGUCGUu -3'
miRNA:   3'- -CCAGGUGGaa---GCGGU-GCA-GaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 822 0.69 0.551399
Target:  5'- cGUgCCGCCgcaggUCGUCgagcGCGUCUcucaCGUCGCg -3'
miRNA:   3'- cCA-GGUGGa----AGCGG----UGCAGA----GCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 36164 0.69 0.551399
Target:  5'- uGGU-CGCCgaccgcUCGCCGCGaUUCGUaCGCa -3'
miRNA:   3'- -CCAgGUGGa-----AGCGGUGCaGAGCA-GCG- -5'
11448 5' -55.4 NC_003085.1 + 12391 0.69 0.540785
Target:  5'- cGUCCACCUgcaucCG-CACGUCgUCGgCGCc -3'
miRNA:   3'- cCAGGUGGAa----GCgGUGCAG-AGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 40129 0.69 0.530241
Target:  5'- uGGUCCugGCCgcCG-CGCGUCUgaGUCGCu -3'
miRNA:   3'- -CCAGG--UGGaaGCgGUGCAGAg-CAGCG- -5'
11448 5' -55.4 NC_003085.1 + 42348 0.69 0.530241
Target:  5'- uGGaCUuCCUUCGCCGCccgCUCG-CGCa -3'
miRNA:   3'- -CCaGGuGGAAGCGGUGca-GAGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 722 0.69 0.517688
Target:  5'- aGGUCCACCcgcgccucagUCGCCuccgcugguugcCGgagUUCGUCGCc -3'
miRNA:   3'- -CCAGGUGGa---------AGCGGu-----------GCa--GAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 28927 0.69 0.517688
Target:  5'- aGGuUCCACCgcgucuagCGUCAUGcgcggagucgcgCUCGUCGCg -3'
miRNA:   3'- -CC-AGGUGGaa------GCGGUGCa-----------GAGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.