miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11449 3' -61.6 NC_003085.1 + 12786 0.67 0.340095
Target:  5'- cCUGCCGC-CGuuGuCGGGcaggugCUCCACg -3'
miRNA:   3'- aGGCGGCGcGCggC-GCCUua----GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 2607 0.67 0.340095
Target:  5'- -aCGCUGCGCGCgaagaaGCGGAGcgcuggCUCC-Ca -3'
miRNA:   3'- agGCGGCGCGCGg-----CGCCUUa-----GAGGuG- -5'
11449 3' -61.6 NC_003085.1 + 25884 0.67 0.340095
Target:  5'- gCCGCCGUGCcggaCGCGcu-UCUCCAg -3'
miRNA:   3'- aGGCGGCGCGcg--GCGCcuuAGAGGUg -5'
11449 3' -61.6 NC_003085.1 + 35933 0.67 0.332235
Target:  5'- cCCGUCGggguaGCGCuUGCGGAGcuUCUCgACg -3'
miRNA:   3'- aGGCGGCg----CGCG-GCGCCUU--AGAGgUG- -5'
11449 3' -61.6 NC_003085.1 + 27988 0.67 0.32451
Target:  5'- -aCGCCGCGCagGCCGCccuugucgGcGAAcgucagccaguUCUCCACg -3'
miRNA:   3'- agGCGGCGCG--CGGCG--------C-CUU-----------AGAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 45516 0.67 0.323745
Target:  5'- aUCCccggGCCGCGacaacauCGCCGCGGcg-CUCgGCu -3'
miRNA:   3'- -AGG----CGGCGC-------GCGGCGCCuuaGAGgUG- -5'
11449 3' -61.6 NC_003085.1 + 14285 0.67 0.323745
Target:  5'- gCUGCCGUcaaGCGCCGCGcagcccucaguaaGAGUCgCCAg -3'
miRNA:   3'- aGGCGGCG---CGCGGCGC-------------CUUAGaGGUg -5'
11449 3' -61.6 NC_003085.1 + 25640 0.67 0.322218
Target:  5'- --gGCCGgGCGCCccgucuucaaggacGUGGAGUacaUCCGCa -3'
miRNA:   3'- aggCGGCgCGCGG--------------CGCCUUAg--AGGUG- -5'
11449 3' -61.6 NC_003085.1 + 13691 0.67 0.316919
Target:  5'- aCCgGCCGuCGCGCCGC-GAAgcaCCACc -3'
miRNA:   3'- aGG-CGGC-GCGCGGCGcCUUagaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 26880 0.67 0.316167
Target:  5'- cCUGCCG-GCGCCGgUGGGuggacucaacaccGUCUCgGCg -3'
miRNA:   3'- aGGCGGCgCGCGGC-GCCU-------------UAGAGgUG- -5'
11449 3' -61.6 NC_003085.1 + 9577 0.67 0.309462
Target:  5'- cCUGCCGC-CGCCGagcacCGGcgucUCUCCGCc -3'
miRNA:   3'- aGGCGGCGcGCGGC-----GCCuu--AGAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 19691 0.67 0.309462
Target:  5'- gCgGCCcuggagGCGCGCgGCGGcAUCUgCACc -3'
miRNA:   3'- aGgCGG------CGCGCGgCGCCuUAGAgGUG- -5'
11449 3' -61.6 NC_003085.1 + 34296 0.67 0.309462
Target:  5'- uUCCGCCGaGCGUCGCGGGcagggCACc -3'
miRNA:   3'- -AGGCGGCgCGCGGCGCCUuagagGUG- -5'
11449 3' -61.6 NC_003085.1 + 9217 0.67 0.309462
Target:  5'- gUUCGCCGCGggaaGCCGCGGugugGAUUUgCAa -3'
miRNA:   3'- -AGGCGGCGCg---CGGCGCC----UUAGAgGUg -5'
11449 3' -61.6 NC_003085.1 + 11882 0.67 0.307987
Target:  5'- aUCGCCugaGCGCGCCGaguucauggccaGGcg-CUCCACg -3'
miRNA:   3'- aGGCGG---CGCGCGGCg-----------CCuuaGAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 7290 0.68 0.280978
Target:  5'- aCCGCCGCcaaGCuCGaCGGGaaGUCUCCGa -3'
miRNA:   3'- aGGCGGCGcg-CG-GC-GCCU--UAGAGGUg -5'
11449 3' -61.6 NC_003085.1 + 29773 0.68 0.280978
Target:  5'- gCCGCCGCGCGCCuccaGGg----CCGCc -3'
miRNA:   3'- aGGCGGCGCGCGGcg--CCuuagaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 4209 0.68 0.280978
Target:  5'- gCCGCUGaCGCGCgGCGGGuuacgcugagcGUCagccgggCCGCa -3'
miRNA:   3'- aGGCGGC-GCGCGgCGCCU-----------UAGa------GGUG- -5'
11449 3' -61.6 NC_003085.1 + 14614 0.68 0.280978
Target:  5'- gUCCGCCGCGUcgaagcucauggGCUGUGuGAcgC-CCACc -3'
miRNA:   3'- -AGGCGGCGCG------------CGGCGC-CUuaGaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 10611 0.68 0.261009
Target:  5'- gUCGCCGCGCGCCGUcgcaguGGGAcga-CGCg -3'
miRNA:   3'- aGGCGGCGCGCGGCG------CCUUagagGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.