miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11449 5' -55.7 NC_003085.1 + 2264 0.67 0.576933
Target:  5'- cCGGGGGGCcucGUCGCggACUucuucGCGGGCu -3'
miRNA:   3'- -GUCUCCUGaa-CGGCGa-UGGu----UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 4196 0.67 0.576933
Target:  5'- gCAGAcgcaGGAC--GCCGCUgacGCgCGGCGGGUu -3'
miRNA:   3'- -GUCU----CCUGaaCGGCGA---UG-GUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 11719 0.67 0.572547
Target:  5'- aGGAGGACgccgaccucgacgUGgUGCUGUCGAgGGGCa -3'
miRNA:   3'- gUCUCCUGa------------ACgGCGAUGGUUgCCCG- -5'
11449 5' -55.7 NC_003085.1 + 7075 0.67 0.570357
Target:  5'- aGGAGGACaaggcccgcgcucaUGCCGCcgagggcaugcGCgAGCGGGCg -3'
miRNA:   3'- gUCUCCUGa-------------ACGGCGa----------UGgUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 32230 0.67 0.565983
Target:  5'- cCAGAGcACggggcGCCGCgugcucACCAGCGGcGCu -3'
miRNA:   3'- -GUCUCcUGaa---CGGCGa-----UGGUUGCC-CG- -5'
11449 5' -55.7 NC_003085.1 + 17290 0.67 0.565983
Target:  5'- -uGAGGAUgcGCCGCUGCUGGauGuGCg -3'
miRNA:   3'- guCUCCUGaaCGGCGAUGGUUgcC-CG- -5'
11449 5' -55.7 NC_003085.1 + 12388 0.68 0.544256
Target:  5'- uGGaAGGGCcgggUGCUGCUGcucgacCCGGCGGGg -3'
miRNA:   3'- gUC-UCCUGa---ACGGCGAU------GGUUGCCCg -5'
11449 5' -55.7 NC_003085.1 + 25735 0.68 0.544256
Target:  5'- aUAGGGGGCUcuaucGCCGCcagUACgAggcauuccucGCGGGCa -3'
miRNA:   3'- -GUCUCCUGAa----CGGCG---AUGgU----------UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 10734 0.68 0.533493
Target:  5'- aAGcGGACgcugUUGCUGUccgGCCAcACGGGCg -3'
miRNA:   3'- gUCuCCUG----AACGGCGa--UGGU-UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 12542 0.68 0.533493
Target:  5'- gCAGAGGGaugccacccGCCGCcGCUGGcCGGGCu -3'
miRNA:   3'- -GUCUCCUgaa------CGGCGaUGGUU-GCCCG- -5'
11449 5' -55.7 NC_003085.1 + 4606 0.68 0.533493
Target:  5'- -cGAGGGCccUGCCGUUuUCGucgugACGGGCu -3'
miRNA:   3'- guCUCCUGa-ACGGCGAuGGU-----UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 22547 0.68 0.533493
Target:  5'- gCAGGccaacGGcCUUGCCGaUGCCGaugacuucACGGGCg -3'
miRNA:   3'- -GUCU-----CCuGAACGGCgAUGGU--------UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 32536 0.68 0.512204
Target:  5'- -cGGGGcCUUGCC-CU-CC-ACGGGCg -3'
miRNA:   3'- guCUCCuGAACGGcGAuGGuUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 26620 0.68 0.501691
Target:  5'- ---cGGACUcuccuUCGCUGCCGACGuGGCa -3'
miRNA:   3'- gucuCCUGAac---GGCGAUGGUUGC-CCG- -5'
11449 5' -55.7 NC_003085.1 + 8491 0.68 0.498556
Target:  5'- -cGAGGcGCUgGCCcgccaguacgacgcGC-ACCAGCGGGCg -3'
miRNA:   3'- guCUCC-UGAaCGG--------------CGaUGGUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 10517 0.69 0.491275
Target:  5'- -uGAGGACgacccaGCCGCcagugaguCCAcCGGGCa -3'
miRNA:   3'- guCUCCUGaa----CGGCGau------GGUuGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 27940 0.69 0.491275
Target:  5'- --cAGGGCgucagcGCCGCga-CGACGGGCu -3'
miRNA:   3'- gucUCCUGaa----CGGCGaugGUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 2717 0.69 0.480959
Target:  5'- -cGAGGACUucggGCgGCUGgCAGCGcGCg -3'
miRNA:   3'- guCUCCUGAa---CGgCGAUgGUUGCcCG- -5'
11449 5' -55.7 NC_003085.1 + 27299 0.69 0.480959
Target:  5'- gCAGGGGACUggcGUCGgUgaaAUCGACGGGg -3'
miRNA:   3'- -GUCUCCUGAa--CGGCgA---UGGUUGCCCg -5'
11449 5' -55.7 NC_003085.1 + 32918 0.69 0.450669
Target:  5'- gCAGuuGGA---GUCGCUGCCuuCGGGCa -3'
miRNA:   3'- -GUCu-CCUgaaCGGCGAUGGuuGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.