miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11450 3' -56.4 NC_003085.1 + 34349 0.67 0.550075
Target:  5'- gCGGcGCGGCGcuccauccGCUcGUCGAgGGUGAGg -3'
miRNA:   3'- aGCC-UGUCGC--------CGAaCAGCUgCCACUU- -5'
11450 3' -56.4 NC_003085.1 + 32552 0.68 0.486627
Target:  5'- aCGGGCGGgGGCUgggGUgCGA-GGUGGc -3'
miRNA:   3'- aGCCUGUCgCCGAa--CA-GCUgCCACUu -5'
11450 3' -56.4 NC_003085.1 + 24704 0.68 0.486627
Target:  5'- cUGGACGGCGGCa--UCGGCGGc--- -3'
miRNA:   3'- aGCCUGUCGCCGaacAGCUGCCacuu -5'
11450 3' -56.4 NC_003085.1 + 2140 0.68 0.486627
Target:  5'- -aGGGCGGCGcGCUgga-GAUGGUGGAc -3'
miRNA:   3'- agCCUGUCGC-CGAacagCUGCCACUU- -5'
11450 3' -56.4 NC_003085.1 + 31223 0.68 0.466242
Target:  5'- cUCGGACAuCGGCgUGUCGccugaGCGcGUGAu -3'
miRNA:   3'- -AGCCUGUcGCCGaACAGC-----UGC-CACUu -5'
11450 3' -56.4 NC_003085.1 + 16699 0.69 0.426858
Target:  5'- -aGGGCGGgGGCUUGgggcuugCGACGGg--- -3'
miRNA:   3'- agCCUGUCgCCGAACa------GCUGCCacuu -5'
11450 3' -56.4 NC_003085.1 + 38208 0.69 0.423028
Target:  5'- cUCGGGCGGCGGUggcucgugcacucUcgacggcagcacGUCGGCGGUGGc -3'
miRNA:   3'- -AGCCUGUCGCCGa------------A------------CAGCUGCCACUu -5'
11450 3' -56.4 NC_003085.1 + 42639 0.69 0.40792
Target:  5'- -aGGACuccucUGGCUggguggGUCGACGGUGAc -3'
miRNA:   3'- agCCUGuc---GCCGAa-----CAGCUGCCACUu -5'
11450 3' -56.4 NC_003085.1 + 42873 0.74 0.202044
Target:  5'- cCGGcCGGgGGCgUGUCGAgGGUGAGg -3'
miRNA:   3'- aGCCuGUCgCCGaACAGCUgCCACUU- -5'
11450 3' -56.4 NC_003085.1 + 28059 0.76 0.153847
Target:  5'- cUCGGACAGCaGGCg-GcCGAUGGUGAGu -3'
miRNA:   3'- -AGCCUGUCG-CCGaaCaGCUGCCACUU- -5'
11450 3' -56.4 NC_003085.1 + 23591 0.79 0.103831
Target:  5'- cCGGcACGGCGGCgaguUGcUCGACGGUGAc -3'
miRNA:   3'- aGCC-UGUCGCCGa---AC-AGCUGCCACUu -5'
11450 3' -56.4 NC_003085.1 + 30240 1.07 0.000944
Target:  5'- gUCGGACAGCGGCUUGUCGACGGUGAAg -3'
miRNA:   3'- -AGCCUGUCGCCGAACAGCUGCCACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.