Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11452 | 3' | -54.6 | NC_003085.1 | + | 39693 | 0.68 | 0.57745 |
Target: 5'- cGUCGAAGCGCuuGUgaAGCUCGCu-- -3' miRNA: 3'- -CAGCUUCGCGcgCAacUUGAGCGcgu -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 43538 | 0.69 | 0.53366 |
Target: 5'- -cCGAAgGCgGCGCGUccAGCUUGCGCGa -3' miRNA: 3'- caGCUU-CG-CGCGCAacUUGAGCGCGU- -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 17265 | 0.69 | 0.516466 |
Target: 5'- -gCGcAGgGCGCGUUGAagcacgcgcgccaccACUgGCGCAg -3' miRNA: 3'- caGCuUCgCGCGCAACU---------------UGAgCGCGU- -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 40779 | 0.69 | 0.501606 |
Target: 5'- -cCGAAGUGCGCGcac-GCgUCGCGCGc -3' miRNA: 3'- caGCUUCGCGCGCaacuUG-AGCGCGU- -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 1101 | 0.7 | 0.491108 |
Target: 5'- --aGGAGCGCGCG-UGAgucACUCggagagGCGCAg -3' miRNA: 3'- cagCUUCGCGCGCaACU---UGAG------CGCGU- -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 7862 | 0.7 | 0.480713 |
Target: 5'- --aGAAGCGCGCGgaacuggggcUUGAGCcguUCGUGCu -3' miRNA: 3'- cagCUUCGCGCGC----------AACUUG---AGCGCGu -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 19058 | 0.7 | 0.470427 |
Target: 5'- -cCGcGGCGCGCGgcgGAGCagGCGCc -3' miRNA: 3'- caGCuUCGCGCGCaa-CUUGagCGCGu -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 13913 | 0.7 | 0.460253 |
Target: 5'- -gCGGcguGCGCGCGUUucGGACggggCGCGCGc -3' miRNA: 3'- caGCUu--CGCGCGCAA--CUUGa---GCGCGU- -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 37421 | 0.71 | 0.440264 |
Target: 5'- -gCGAAGCgGCGCac-GAAgUCGCGCAg -3' miRNA: 3'- caGCUUCG-CGCGcaaCUUgAGCGCGU- -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 15219 | 0.71 | 0.430456 |
Target: 5'- --gGAAGUGgGCGaggUGGACUUGCGCc -3' miRNA: 3'- cagCUUCGCgCGCa--ACUUGAGCGCGu -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 43821 | 0.71 | 0.420777 |
Target: 5'- uGUCGuAGcCG-GUGUUGAGgUCGCGCAg -3' miRNA: 3'- -CAGCuUC-GCgCGCAACUUgAGCGCGU- -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 2983 | 0.72 | 0.35688 |
Target: 5'- cGUCG-AGCGCGCGUggGAaccGCUCcccgcuggGCGCAc -3' miRNA: 3'- -CAGCuUCGCGCGCAa-CU---UGAG--------CGCGU- -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 7041 | 0.73 | 0.339918 |
Target: 5'- -gCGggGUGgGCGaUGAGCcCGCGCGa -3' miRNA: 3'- caGCuuCGCgCGCaACUUGaGCGCGU- -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 8541 | 0.73 | 0.33166 |
Target: 5'- cUCucGGCGCGCGgcGAGCUCGUcacgGCAg -3' miRNA: 3'- cAGcuUCGCGCGCaaCUUGAGCG----CGU- -5' |
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11452 | 3' | -54.6 | NC_003085.1 | + | 28460 | 1.09 | 0.001043 |
Target: 5'- cGUCGAAGCGCGCGUUGAACUCGCGCAu -3' miRNA: 3'- -CAGCUUCGCGCGCAACUUGAGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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