miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11452 5' -59.8 NC_003085.1 + 1251 0.67 0.379008
Target:  5'- -cUGCGGAGgcagguGGCCgaauccaaggugGGCCACCucgugcGCGCCg -3'
miRNA:   3'- caACGCCUU------CCGG------------UCGGUGG------CGUGGa -5'
11452 5' -59.8 NC_003085.1 + 20833 0.67 0.370299
Target:  5'- --aGgGGuaucgaAAGGCCGGCCGCagcagcgaGCGCCa -3'
miRNA:   3'- caaCgCC------UUCCGGUCGGUGg-------CGUGGa -5'
11452 5' -59.8 NC_003085.1 + 48753 0.67 0.370299
Target:  5'- --cGCGGguGGaCCuGCUcagGCCGCGCCc -3'
miRNA:   3'- caaCGCCuuCC-GGuCGG---UGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 12242 0.67 0.370299
Target:  5'- --gGCGGcuGGGCCgccagaauugaaGGCCGCUgGCGCCg -3'
miRNA:   3'- caaCGCCu-UCCGG------------UCGGUGG-CGUGGa -5'
11452 5' -59.8 NC_003085.1 + 8232 0.67 0.361727
Target:  5'- cGUUGUa-GAGGCCGcacGUCACCGUGCCa -3'
miRNA:   3'- -CAACGccUUCCGGU---CGGUGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 34194 0.67 0.361727
Target:  5'- --cGCGGcGGGUgAGCUcgGCCGCgGCCUc -3'
miRNA:   3'- caaCGCCuUCCGgUCGG--UGGCG-UGGA- -5'
11452 5' -59.8 NC_003085.1 + 20221 0.67 0.361727
Target:  5'- cGUUGCGGuAGGCCucGCUGCCcuCGCUg -3'
miRNA:   3'- -CAACGCCuUCCGGu-CGGUGGc-GUGGa -5'
11452 5' -59.8 NC_003085.1 + 15361 0.67 0.353295
Target:  5'- -aUGCGGu-GGCCcugacGCCACCGaaccCGCCUc -3'
miRNA:   3'- caACGCCuuCCGGu----CGGUGGC----GUGGA- -5'
11452 5' -59.8 NC_003085.1 + 38991 0.67 0.345002
Target:  5'- --aGCaGGucGGCCAGCCGagggGCGCCa -3'
miRNA:   3'- caaCG-CCuuCCGGUCGGUgg--CGUGGa -5'
11452 5' -59.8 NC_003085.1 + 29203 0.67 0.345002
Target:  5'- --cGCcGGAGGCacCAGCgACUGCGCCa -3'
miRNA:   3'- caaCGcCUUCCG--GUCGgUGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 37944 0.67 0.336851
Target:  5'- --cGCGc--GGCCGGUaACCGCACCa -3'
miRNA:   3'- caaCGCcuuCCGGUCGgUGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 24495 0.67 0.336851
Target:  5'- -cUGCGGcAGGau-GCCGCCGUACUc -3'
miRNA:   3'- caACGCCuUCCgguCGGUGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 23217 0.68 0.32884
Target:  5'- --aGUGGccGGGCUgcuccagacGGCCGCCGCGCUUc -3'
miRNA:   3'- caaCGCCu-UCCGG---------UCGGUGGCGUGGA- -5'
11452 5' -59.8 NC_003085.1 + 49169 0.68 0.32884
Target:  5'- --gGUcGGAGGCCGcccgguccuGCCGCCGCugCUc -3'
miRNA:   3'- caaCGcCUUCCGGU---------CGGUGGCGugGA- -5'
11452 5' -59.8 NC_003085.1 + 48890 0.68 0.324102
Target:  5'- -cUGCGGcgGGGGCCgcccugcacuucgacGGCCACCcCGCCc -3'
miRNA:   3'- caACGCC--UUCCGG---------------UCGGUGGcGUGGa -5'
11452 5' -59.8 NC_003085.1 + 27364 0.68 0.320971
Target:  5'- -cUGCuGGgcGGCCuGCUuCUGCGCCUc -3'
miRNA:   3'- caACG-CCuuCCGGuCGGuGGCGUGGA- -5'
11452 5' -59.8 NC_003085.1 + 46218 0.68 0.320971
Target:  5'- --gGCGGGcgaguguguGGGCCGGCC-CagguaGCGCCg -3'
miRNA:   3'- caaCGCCU---------UCCGGUCGGuGg----CGUGGa -5'
11452 5' -59.8 NC_003085.1 + 31389 0.68 0.313244
Target:  5'- --cGCaaaGAGGCCAGCCGCaCGUACUc -3'
miRNA:   3'- caaCGcc-UUCCGGUCGGUG-GCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 34432 0.68 0.305659
Target:  5'- -cUGCGGcuuGGGCCGGCCcaGCgGCAaguCCa -3'
miRNA:   3'- caACGCCu--UCCGGUCGG--UGgCGU---GGa -5'
11452 5' -59.8 NC_003085.1 + 37189 0.68 0.298215
Target:  5'- --cGgGGAcGGCCAGUuuCACgGCGCCa -3'
miRNA:   3'- caaCgCCUuCCGGUCG--GUGgCGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.