miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11453 3' -63.3 NC_003085.1 + 17241 0.66 0.324067
Target:  5'- gCGCCCcGUgcUCUGGGcGGUGuugcGCAGGGCg -3'
miRNA:   3'- gGCGGGaCA--GGGUCC-CCAC----CGUCCUG- -5'
11453 3' -63.3 NC_003085.1 + 26392 0.66 0.306997
Target:  5'- gCCGCUgaGcgCCCAGGGcUGGCAGuugcuccaggugcuGACg -3'
miRNA:   3'- -GGCGGgaCa-GGGUCCCcACCGUC--------------CUG- -5'
11453 3' -63.3 NC_003085.1 + 15284 0.66 0.278968
Target:  5'- cCCGCCgcgcccgcgucaugCUGgCCCGGGGcGUcgagcccauagaGGUAGGGCg -3'
miRNA:   3'- -GGCGG--------------GACaGGGUCCC-CA------------CCGUCCUG- -5'
11453 3' -63.3 NC_003085.1 + 41998 0.67 0.261224
Target:  5'- gCCGUguuCCUGcCCCGGcGGcGUcGGCAcGGACg -3'
miRNA:   3'- -GGCG---GGACaGGGUC-CC-CA-CCGU-CCUG- -5'
11453 3' -63.3 NC_003085.1 + 11269 0.67 0.245017
Target:  5'- gCCGCCCgaGUugccgccagCCCAGGGGaacaccugcgccgcGGCGGGGa -3'
miRNA:   3'- -GGCGGGa-CA---------GGGUCCCCa-------------CCGUCCUg -5'
11453 3' -63.3 NC_003085.1 + 875 0.67 0.242599
Target:  5'- gCGCCU--UCCCGGcGGUGGCguccgaGGGGCa -3'
miRNA:   3'- gGCGGGacAGGGUCcCCACCG------UCCUG- -5'
11453 3' -63.3 NC_003085.1 + 38802 0.68 0.236641
Target:  5'- gCUGCgCUGUCgcucagCCAGGcGuGUGaGCAGGGCg -3'
miRNA:   3'- -GGCGgGACAG------GGUCC-C-CAC-CGUCCUG- -5'
11453 3' -63.3 NC_003085.1 + 11574 0.68 0.225092
Target:  5'- aCCGUCCUG-CCCGcgccuggcuGGaacGG-GGCAGGGCg -3'
miRNA:   3'- -GGCGGGACaGGGU---------CC---CCaCCGUCCUG- -5'
11453 3' -63.3 NC_003085.1 + 9191 0.68 0.225092
Target:  5'- gCGCagaCgagGUUgUAGGGG-GGCGGGACg -3'
miRNA:   3'- gGCGg--Ga--CAGgGUCCCCaCCGUCCUG- -5'
11453 3' -63.3 NC_003085.1 + 27077 0.68 0.219499
Target:  5'- gCGCCCcGUCUCGGGGuuggGGCGGuACa -3'
miRNA:   3'- gGCGGGaCAGGGUCCCca--CCGUCcUG- -5'
11453 3' -63.3 NC_003085.1 + 14409 0.69 0.203429
Target:  5'- -gGCCCcaacUCCCAGGGGaUGGgaguaGGGACu -3'
miRNA:   3'- ggCGGGac--AGGGUCCCC-ACCg----UCCUG- -5'
11453 3' -63.3 NC_003085.1 + 37874 0.74 0.080173
Target:  5'- gCCGCCCUGcCCCguuccagccAGGcGcgGGCAGGACg -3'
miRNA:   3'- -GGCGGGACaGGG---------UCCcCa-CCGUCCUG- -5'
11453 3' -63.3 NC_003085.1 + 28363 1.09 0.000138
Target:  5'- uCCGCCCUGUCCCAGGGGUGGCAGGACu -3'
miRNA:   3'- -GGCGGGACAGGGUCCCCACCGUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.