miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11453 5' -59.2 NC_003085.1 + 17259 0.66 0.457058
Target:  5'- aCGGCUguaCCugCUUCggaGGGAUGGGc -3'
miRNA:   3'- aGCCGAacgGGugGAAG---CCCUGCCUu -5'
11453 5' -59.2 NC_003085.1 + 40218 0.66 0.457058
Target:  5'- cUGGCUgGCCCucGCCaUUGGuGGCGGGc -3'
miRNA:   3'- aGCCGAaCGGG--UGGaAGCC-CUGCCUu -5'
11453 5' -59.2 NC_003085.1 + 25406 0.66 0.447291
Target:  5'- gCGGCUU-CCCGCgCUUCGccaGGCGGGc -3'
miRNA:   3'- aGCCGAAcGGGUG-GAAGCc--CUGCCUu -5'
11453 5' -59.2 NC_003085.1 + 27148 0.66 0.428112
Target:  5'- -aGGU--GCUCACCUUCGGGgaccagACGGGc -3'
miRNA:   3'- agCCGaaCGGGUGGAAGCCC------UGCCUu -5'
11453 5' -59.2 NC_003085.1 + 39896 0.67 0.409428
Target:  5'- cUCGGCggcgGCaggccaaacgCCGCuCUUUGGGAUGGGGu -3'
miRNA:   3'- -AGCCGaa--CG----------GGUG-GAAGCCCUGCCUU- -5'
11453 5' -59.2 NC_003085.1 + 20756 0.67 0.400278
Target:  5'- cCGGCUgcUGCCCGgCUUCGGGcUGu-- -3'
miRNA:   3'- aGCCGA--ACGGGUgGAAGCCCuGCcuu -5'
11453 5' -59.2 NC_003085.1 + 28732 0.67 0.373626
Target:  5'- uUCGGCUU-CCgugagacgCACCgggugCGGGACGGGu -3'
miRNA:   3'- -AGCCGAAcGG--------GUGGaa---GCCCUGCCUu -5'
11453 5' -59.2 NC_003085.1 + 5838 0.68 0.365013
Target:  5'- aUGGCcucccgUGCCCGCuCUgcacUCGGGAUGGc- -3'
miRNA:   3'- aGCCGa-----ACGGGUG-GA----AGCCCUGCCuu -5'
11453 5' -59.2 NC_003085.1 + 5694 0.68 0.359912
Target:  5'- cCGGUgUugaguccaagcccgcGCCCACCacCGGGGCGGAc -3'
miRNA:   3'- aGCCGaA---------------CGGGUGGaaGCCCUGCCUu -5'
11453 5' -59.2 NC_003085.1 + 14964 0.68 0.331954
Target:  5'- -aGcGCUgcgGCCCACCUcCGGGAggcUGGAc -3'
miRNA:   3'- agC-CGAa--CGGGUGGAaGCCCU---GCCUu -5'
11453 5' -59.2 NC_003085.1 + 115 0.7 0.270546
Target:  5'- gCGGCggGCCC-CCaauguggggagagggCGGGACGGAGc -3'
miRNA:   3'- aGCCGaaCGGGuGGaa-------------GCCCUGCCUU- -5'
11453 5' -59.2 NC_003085.1 + 42779 0.7 0.265808
Target:  5'- gUCGGCUUGa--GCC-UCGGuGACGGGAg -3'
miRNA:   3'- -AGCCGAACgggUGGaAGCC-CUGCCUU- -5'
11453 5' -59.2 NC_003085.1 + 27941 0.74 0.142354
Target:  5'- cCGGaCUUGCCCAUCUacucguccgcggugUGGGGCGGGAa -3'
miRNA:   3'- aGCC-GAACGGGUGGAa-------------GCCCUGCCUU- -5'
11453 5' -59.2 NC_003085.1 + 28408 1.06 0.000514
Target:  5'- uUCGGCUUGCCCACCUUCGGGACGGAAg -3'
miRNA:   3'- -AGCCGAACGGGUGGAAGCCCUGCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.