Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11454 | 5' | -58.4 | NC_003085.1 | + | 39073 | 0.66 | 0.519717 |
Target: 5'- cGUGUCCACGu-CUCcuuCG-CGGUAGUCa -3' miRNA: 3'- -CGCAGGUGCucGAGc--GCgGCCAUCAG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 40021 | 0.66 | 0.49919 |
Target: 5'- uCGUCCAUGAGCgccggcacgucCGCGUCguGGUAGg- -3' miRNA: 3'- cGCAGGUGCUCGa----------GCGCGG--CCAUCag -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 11179 | 0.66 | 0.49919 |
Target: 5'- gGCaaagCC-CGAGCUCGCGCCauccGUcGUCg -3' miRNA: 3'- -CGca--GGuGCUCGAGCGCGGc---CAuCAG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 35899 | 0.66 | 0.529063 |
Target: 5'- aCGUCCACGcgcgccuuGCUCGCcUCGGUGugaacccGUCg -3' miRNA: 3'- cGCAGGUGCu-------CGAGCGcGGCCAU-------CAG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 1931 | 0.66 | 0.540568 |
Target: 5'- uCGcUCGCGGGCUCGuCGgucCCGGUGGcCg -3' miRNA: 3'- cGCaGGUGCUCGAGC-GC---GGCCAUCaG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 11763 | 0.66 | 0.540568 |
Target: 5'- cGCGUCUACGAcgguacggcgGCgccgCGCuCCGGgcguGUCg -3' miRNA: 3'- -CGCAGGUGCU----------CGa---GCGcGGCCau--CAG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 9144 | 0.66 | 0.540568 |
Target: 5'- aGCGgcaCCugGcggAGCUCGcCGCCGcGcAGUCc -3' miRNA: 3'- -CGCa--GGugC---UCGAGC-GCGGC-CaUCAG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 5516 | 0.67 | 0.489062 |
Target: 5'- cGCGUCggCACGuGCUCGCaCUGGUGc-- -3' miRNA: 3'- -CGCAG--GUGCuCGAGCGcGGCCAUcag -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 815 | 0.67 | 0.489062 |
Target: 5'- aCGUCCGCGuGC-CGCcGCaGGUcGUCg -3' miRNA: 3'- cGCAGGUGCuCGaGCG-CGgCCAuCAG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 27708 | 0.67 | 0.478034 |
Target: 5'- gGCGUCCGCccGCugUCGCGCCucguugcuggcgaGGUGGa- -3' miRNA: 3'- -CGCAGGUGcuCG--AGCGCGG-------------CCAUCag -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 39490 | 0.67 | 0.449569 |
Target: 5'- cGCGUCgAgGcGCUCGagaaGCCGGUGcgccucGUCg -3' miRNA: 3'- -CGCAGgUgCuCGAGCg---CGGCCAU------CAG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 7545 | 0.67 | 0.488054 |
Target: 5'- cGUGggCACGGGCUacacgcccgagaaUGCGCUGG-AGUCg -3' miRNA: 3'- -CGCagGUGCUCGA-------------GCGCGGCCaUCAG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 28842 | 0.67 | 0.45928 |
Target: 5'- cGCGUCCGCGAa---GCGCCGGc---- -3' miRNA: 3'- -CGCAGGUGCUcgagCGCGGCCaucag -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 34545 | 0.68 | 0.421133 |
Target: 5'- aGCG-CCACGcGCUgGCGgCCGGUGc-- -3' miRNA: 3'- -CGCaGGUGCuCGAgCGC-GGCCAUcag -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 40314 | 0.68 | 0.427671 |
Target: 5'- cGCGgCgGCGAGCUC-CGCCaGGUgccgcucccagagaGGUCg -3' miRNA: 3'- -CGCaGgUGCUCGAGcGCGG-CCA--------------UCAG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 27014 | 0.69 | 0.38496 |
Target: 5'- gGUGUagACGGGCUgGCGCUccucgacggacuGGUAGUCc -3' miRNA: 3'- -CGCAggUGCUCGAgCGCGG------------CCAUCAG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 8139 | 0.69 | 0.376244 |
Target: 5'- -aGUCCcCGGGCUucggCGUGUCGGUGGg- -3' miRNA: 3'- cgCAGGuGCUCGA----GCGCGGCCAUCag -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 28609 | 0.7 | 0.334697 |
Target: 5'- gGCGgcaccgcagCgGCGAGCUCgGCGCCGGUcGcCu -3' miRNA: 3'- -CGCa--------GgUGCUCGAG-CGCGGCCAuCaG- -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 13623 | 0.7 | 0.334697 |
Target: 5'- uCGUCUACGAGCgccugGCGCCGG-AGc- -3' miRNA: 3'- cGCAGGUGCUCGag---CGCGGCCaUCag -5' |
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11454 | 5' | -58.4 | NC_003085.1 | + | 23781 | 0.71 | 0.261971 |
Target: 5'- aGCGg-CAUGGGCgaauUCGUccgGCCGGUAGUCg -3' miRNA: 3'- -CGCagGUGCUCG----AGCG---CGGCCAUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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