miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11455 5' -53.6 NC_003085.1 + 44640 0.67 0.703185
Target:  5'- cGAGGuuGGcucagaGUGUcggUGCCGGGCUUUGg -3'
miRNA:   3'- aCUUCggCC------UACG---ACGGCUUGAAGCg -5'
11455 5' -53.6 NC_003085.1 + 14161 0.67 0.680984
Target:  5'- aGccGCCGcGAccUGCUGCCGAGCaaUGUu -3'
miRNA:   3'- aCuuCGGC-CU--ACGACGGCUUGaaGCG- -5'
11455 5' -53.6 NC_003085.1 + 46636 0.68 0.669805
Target:  5'- gGcuGCCGGGcagacguguUGCcagugaUGCCGAggcGCUUCGCc -3'
miRNA:   3'- aCuuCGGCCU---------ACG------ACGGCU---UGAAGCG- -5'
11455 5' -53.6 NC_003085.1 + 19077 0.68 0.669805
Target:  5'- aGgcGCCGGGcccggacggagUGC-GCCGcacccGCUUCGCu -3'
miRNA:   3'- aCuuCGGCCU-----------ACGaCGGCu----UGAAGCG- -5'
11455 5' -53.6 NC_003085.1 + 47162 0.68 0.669805
Target:  5'- cGAGGCaGGccagcgccGUGCUGCCGGAgccCGCg -3'
miRNA:   3'- aCUUCGgCC--------UACGACGGCUUgaaGCG- -5'
11455 5' -53.6 NC_003085.1 + 21810 0.68 0.668684
Target:  5'- aGGAGuuGGcgcccaagGCcGCCGAGCUcaucaagUCGCg -3'
miRNA:   3'- aCUUCggCCua------CGaCGGCUUGA-------AGCG- -5'
11455 5' -53.6 NC_003085.1 + 20799 0.68 0.658588
Target:  5'- gUGGAGUgGGAggagGUUGCCGGGgUggaCGCc -3'
miRNA:   3'- -ACUUCGgCCUa---CGACGGCUUgAa--GCG- -5'
11455 5' -53.6 NC_003085.1 + 14272 0.68 0.658588
Target:  5'- gUGcGGCCaGGcUGCUGCCGucaAGCgccgCGCa -3'
miRNA:   3'- -ACuUCGG-CCuACGACGGC---UUGaa--GCG- -5'
11455 5' -53.6 NC_003085.1 + 42068 0.68 0.647346
Target:  5'- cGGAGCgGGGUGaagacgaUGCCGA--UUUGCu -3'
miRNA:   3'- aCUUCGgCCUACg------ACGGCUugAAGCG- -5'
11455 5' -53.6 NC_003085.1 + 44931 0.68 0.636089
Target:  5'- uUGucGCCGccGAUGCaGCCGGGCUcaaaCGCc -3'
miRNA:   3'- -ACuuCGGC--CUACGaCGGCUUGAa---GCG- -5'
11455 5' -53.6 NC_003085.1 + 28866 0.68 0.624829
Target:  5'- cGAcuuCCGcGgcGCUGCCGAGCagcagUCGCa -3'
miRNA:   3'- aCUuc-GGC-CuaCGACGGCUUGa----AGCG- -5'
11455 5' -53.6 NC_003085.1 + 20366 0.69 0.613575
Target:  5'- gGAgcGGCCGGAUaugaaugagucGCaGCCcacaGACUUCGCg -3'
miRNA:   3'- aCU--UCGGCCUA-----------CGaCGGc---UUGAAGCG- -5'
11455 5' -53.6 NC_003085.1 + 2849 0.69 0.613575
Target:  5'- gUGuuGCCGGGaGgaGCCGAugauGCUgaagCGCa -3'
miRNA:   3'- -ACuuCGGCCUaCgaCGGCU----UGAa---GCG- -5'
11455 5' -53.6 NC_003085.1 + 16537 0.69 0.602338
Target:  5'- -uGAGCCGGucgccGUUGCCGca-UUCGCg -3'
miRNA:   3'- acUUCGGCCua---CGACGGCuugAAGCG- -5'
11455 5' -53.6 NC_003085.1 + 2371 0.69 0.602338
Target:  5'- cGAGGCCGcg-GC-GCgCGAGCUcUCGCa -3'
miRNA:   3'- aCUUCGGCcuaCGaCG-GCUUGA-AGCG- -5'
11455 5' -53.6 NC_003085.1 + 47966 0.69 0.591127
Target:  5'- cGAGcGCCGGAcggGCcgcGUCGAGCaagUCGCg -3'
miRNA:   3'- aCUU-CGGCCUa--CGa--CGGCUUGa--AGCG- -5'
11455 5' -53.6 NC_003085.1 + 11084 0.69 0.591127
Target:  5'- cUGggGCCaaauaGGAUGUcGCCGGcgGCaUUCGUg -3'
miRNA:   3'- -ACuuCGG-----CCUACGaCGGCU--UG-AAGCG- -5'
11455 5' -53.6 NC_003085.1 + 11378 0.69 0.55775
Target:  5'- cGgcGCCGGAcaccugcGCUGCCGu-CUcCGCg -3'
miRNA:   3'- aCuuCGGCCUa------CGACGGCuuGAaGCG- -5'
11455 5' -53.6 NC_003085.1 + 47368 0.7 0.51415
Target:  5'- aUGgcGCCGaGGUGCggcgGCUGcGCUcgUCGCg -3'
miRNA:   3'- -ACuuCGGC-CUACGa---CGGCuUGA--AGCG- -5'
11455 5' -53.6 NC_003085.1 + 11127 0.71 0.457666
Target:  5'- uUGggGCgcgcgucgucucuCGGAUG-UGCCGAcaggggaccuaccuGCUUCGCg -3'
miRNA:   3'- -ACuuCG-------------GCCUACgACGGCU--------------UGAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.