miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11456 3' -55.8 NC_003085.1 + 32047 0.72 0.294118
Target:  5'- --gGggGC-GGCGAgugGCCugggGGACAGCAa -3'
miRNA:   3'- guaCuuCGaCCGCUa--CGG----CCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 12016 0.67 0.547582
Target:  5'- -cUGAcGCUGGCGcaccUGCCGGuGCuGCGc -3'
miRNA:   3'- guACUuCGACCGCu---ACGGCC-UGuCGU- -5'
11456 3' -55.8 NC_003085.1 + 24677 0.67 0.565164
Target:  5'- -cUGAAGUUccucuccacggacGUGGUGCUGGACGGCGg -3'
miRNA:   3'- guACUUCGAc------------CGCUACGGCCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 22950 0.67 0.569583
Target:  5'- --cGgcGC-GGCGAaGCCGGACgAGCc -3'
miRNA:   3'- guaCuuCGaCCGCUaCGGCCUG-UCGu -5'
11456 3' -55.8 NC_003085.1 + 38194 0.67 0.580667
Target:  5'- ---uGGGCUGGCGGcaacUCGGGCGGCGg -3'
miRNA:   3'- guacUUCGACCGCUac--GGCCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 37865 0.66 0.596257
Target:  5'- -----cGCUGGCcggccagacgucggaGGUGCUGGugGGCAc -3'
miRNA:   3'- guacuuCGACCG---------------CUACGGCCugUCGU- -5'
11456 3' -55.8 NC_003085.1 + 4023 0.66 0.602959
Target:  5'- ---aGAGUUGGUGGUGCCGuGACGacGCc -3'
miRNA:   3'- guacUUCGACCGCUACGGC-CUGU--CGu -5'
11456 3' -55.8 NC_003085.1 + 41022 0.66 0.625354
Target:  5'- cCGUGGGcgucGCUGGCGuccucCUGGGCGGCu -3'
miRNA:   3'- -GUACUU----CGACCGCuac--GGCCUGUCGu -5'
11456 3' -55.8 NC_003085.1 + 3551 0.66 0.636567
Target:  5'- -uUGGAccacGCUcaaGGCG--GCCGGGCGGCAa -3'
miRNA:   3'- guACUU----CGA---CCGCuaCGGCCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 40331 0.68 0.515115
Target:  5'- ---aGGGCUGGCGcGUGCCucagugggcGGugGGCAa -3'
miRNA:   3'- guacUUCGACCGC-UACGG---------CCugUCGU- -5'
11456 3' -55.8 NC_003085.1 + 28284 0.68 0.504464
Target:  5'- uGUGGAGC-GGCGAguaccagGCCucGCAGCAg -3'
miRNA:   3'- gUACUUCGaCCGCUa------CGGccUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 34442 0.72 0.294118
Target:  5'- --cGGAGCcGGCGAcGUCGGcCAGCAu -3'
miRNA:   3'- guaCUUCGaCCGCUaCGGCCuGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 42730 0.7 0.358846
Target:  5'- gCGUG-GGCgucggGGCGAUGCgggcgcggUGGACGGCAu -3'
miRNA:   3'- -GUACuUCGa----CCGCUACG--------GCCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 42198 0.7 0.364962
Target:  5'- gCAUGAGGCgcugGGCGAcaggggagugaUGCCacucacgucccacgGGACGGCu -3'
miRNA:   3'- -GUACUUCGa---CCGCU-----------ACGG--------------CCUGUCGu -5'
11456 3' -55.8 NC_003085.1 + 28212 0.69 0.442768
Target:  5'- --cGGAGUUGGCGccaGUGUCGGccaugggugGCGGCAg -3'
miRNA:   3'- guaCUUCGACCGC---UACGGCC---------UGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 31995 0.68 0.483456
Target:  5'- -cUGggGCUGGCGcUGCCucccuuGGACAacucguGCGu -3'
miRNA:   3'- guACuuCGACCGCuACGG------CCUGU------CGU- -5'
11456 3' -55.8 NC_003085.1 + 40771 0.68 0.493908
Target:  5'- uCGUGuGGCUGaCGuUGgCGGACGGCAc -3'
miRNA:   3'- -GUACuUCGACcGCuACgGCCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 44640 0.68 0.493908
Target:  5'- --cGAGGUUGGCucagagugucGGUGCCGGGCuuugGGCc -3'
miRNA:   3'- guaCUUCGACCG----------CUACGGCCUG----UCGu -5'
11456 3' -55.8 NC_003085.1 + 22152 0.68 0.504464
Target:  5'- gGUGGuGGCccaGGCGAUGaagGGACAGCAg -3'
miRNA:   3'- gUACU-UCGa--CCGCUACgg-CCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 27528 1.08 0.000784
Target:  5'- gCAUGAAGCUGGCGAUGCCGGACAGCAc -3'
miRNA:   3'- -GUACUUCGACCGCUACGGCCUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.