Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11456 | 3' | -55.8 | NC_003085.1 | + | 7640 | 0.67 | 0.536681 |
Target: 5'- uCAUGggGCgcuugGGCGgcGCC-GACAuGCGc -3' miRNA: 3'- -GUACuuCGa----CCGCuaCGGcCUGU-CGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 40331 | 0.68 | 0.515115 |
Target: 5'- ---aGGGCUGGCGcGUGCCucagugggcGGugGGCAa -3' miRNA: 3'- guacUUCGACCGC-UACGG---------CCugUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 22152 | 0.68 | 0.504464 |
Target: 5'- gGUGGuGGCccaGGCGAUGaagGGACAGCAg -3' miRNA: 3'- gUACU-UCGa--CCGCUACgg-CCUGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 28284 | 0.68 | 0.504464 |
Target: 5'- uGUGGAGC-GGCGAguaccagGCCucGCAGCAg -3' miRNA: 3'- gUACUUCGaCCGCUa------CGGccUGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 40771 | 0.68 | 0.493908 |
Target: 5'- uCGUGuGGCUGaCGuUGgCGGACGGCAc -3' miRNA: 3'- -GUACuUCGACcGCuACgGCCUGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 44640 | 0.68 | 0.493908 |
Target: 5'- --cGAGGUUGGCucagagugucGGUGCCGGGCuuugGGCc -3' miRNA: 3'- guaCUUCGACCG----------CUACGGCCUG----UCGu -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 31995 | 0.68 | 0.483456 |
Target: 5'- -cUGggGCUGGCGcUGCCucccuuGGACAacucguGCGu -3' miRNA: 3'- guACuuCGACCGCuACGG------CCUGU------CGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 1345 | 0.69 | 0.452762 |
Target: 5'- --aGAcuGCUGGCGAcguUGCCGccaaguacGACAGCGa -3' miRNA: 3'- guaCUu-CGACCGCU---ACGGC--------CUGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 20059 | 0.69 | 0.452762 |
Target: 5'- cCAUG-GGCUGGCcgcGCUGGcGCAGCAa -3' miRNA: 3'- -GUACuUCGACCGcuaCGGCC-UGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 28212 | 0.69 | 0.442768 |
Target: 5'- --cGGAGUUGGCGccaGUGUCGGccaugggugGCGGCAg -3' miRNA: 3'- guaCUUCGACCGC---UACGGCC---------UGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 9057 | 0.7 | 0.385559 |
Target: 5'- --cGAAGgUGGUGAggaguuggaUGCCGGcCAGCGc -3' miRNA: 3'- guaCUUCgACCGCU---------ACGGCCuGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 12584 | 0.7 | 0.37651 |
Target: 5'- gGUGcuGCugaUGGUGGUGCCGGACAcCAc -3' miRNA: 3'- gUACuuCG---ACCGCUACGGCCUGUcGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 42198 | 0.7 | 0.364962 |
Target: 5'- gCAUGAGGCgcugGGCGAcaggggagugaUGCCacucacgucccacgGGACGGCu -3' miRNA: 3'- -GUACUUCGa---CCGCU-----------ACGG--------------CCUGUCGu -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 42730 | 0.7 | 0.358846 |
Target: 5'- gCGUG-GGCgucggGGCGAUGCgggcgcggUGGACGGCAu -3' miRNA: 3'- -GUACuUCGa----CCGCUACG--------GCCUGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 34182 | 0.71 | 0.333454 |
Target: 5'- gCAUGAcGCgGGCGcgGCgGGugAGCu -3' miRNA: 3'- -GUACUuCGaCCGCuaCGgCCugUCGu -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 32047 | 0.72 | 0.294118 |
Target: 5'- --gGggGC-GGCGAgugGCCugggGGACAGCAa -3' miRNA: 3'- guaCuuCGaCCGCUa--CGG----CCUGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 34442 | 0.72 | 0.294118 |
Target: 5'- --cGGAGCcGGCGAcGUCGGcCAGCAu -3' miRNA: 3'- guaCUUCGaCCGCUaCGGCCuGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 20411 | 0.72 | 0.286699 |
Target: 5'- ---cAGGCUGGUGGccaacugcUGCUGGACGGCGu -3' miRNA: 3'- guacUUCGACCGCU--------ACGGCCUGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 47978 | 0.78 | 0.109759 |
Target: 5'- --cGAGGCUGGCGAcggUGaCGGGCGGCGa -3' miRNA: 3'- guaCUUCGACCGCU---ACgGCCUGUCGU- -5' |
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11456 | 3' | -55.8 | NC_003085.1 | + | 27528 | 1.08 | 0.000784 |
Target: 5'- gCAUGAAGCUGGCGAUGCCGGACAGCAc -3' miRNA: 3'- -GUACUUCGACCGCUACGGCCUGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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