miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11458 3' -57.8 NC_003085.1 + 30680 0.66 0.580449
Target:  5'- uGCGCCUCgcauuggcugcuGAGgAGG-CGAaGcgGCGCa -3'
miRNA:   3'- gCGCGGAG------------CUCgUCCaGCU-CaaCGCG- -5'
11458 3' -57.8 NC_003085.1 + 30975 0.66 0.580449
Target:  5'- gGcCGCCUUGAGgaCGGGggcugCGAGUUugaaguccacGCGCu -3'
miRNA:   3'- gC-GCGGAGCUC--GUCCa----GCUCAA----------CGCG- -5'
11458 3' -57.8 NC_003085.1 + 23584 0.66 0.559026
Target:  5'- aGCGCgUCcGGCAcGGcggCGAGUUGCu- -3'
miRNA:   3'- gCGCGgAGcUCGU-CCa--GCUCAACGcg -5'
11458 3' -57.8 NC_003085.1 + 28303 0.66 0.548397
Target:  5'- --gGCCUCGcAGCAGGUgCGcGGUgggacggGCGUg -3'
miRNA:   3'- gcgCGGAGC-UCGUCCA-GC-UCAa------CGCG- -5'
11458 3' -57.8 NC_003085.1 + 731 0.66 0.548397
Target:  5'- aCGCGCCgcucaCGGaCAGG-CGAGagGUGCu -3'
miRNA:   3'- -GCGCGGa----GCUcGUCCaGCUCaaCGCG- -5'
11458 3' -57.8 NC_003085.1 + 26661 0.66 0.537831
Target:  5'- cCGuCGCCUCcuGGGCGGGagCGGccGUUGcCGCu -3'
miRNA:   3'- -GC-GCGGAG--CUCGUCCa-GCU--CAAC-GCG- -5'
11458 3' -57.8 NC_003085.1 + 18674 0.66 0.537831
Target:  5'- gGCGCgCUCacGGCucuuccGGUCGAGgucGCGCu -3'
miRNA:   3'- gCGCG-GAGc-UCGu-----CCAGCUCaa-CGCG- -5'
11458 3' -57.8 NC_003085.1 + 10617 0.66 0.537831
Target:  5'- gCGCGCCgUCGcAGUGGGaCGAcgcGgcagUGCGCc -3'
miRNA:   3'- -GCGCGG-AGC-UCGUCCaGCU---Ca---ACGCG- -5'
11458 3' -57.8 NC_003085.1 + 39260 0.66 0.537831
Target:  5'- gGCgGCCUCccgcggguGAGCAGGUCGcGcaUUGCaGCc -3'
miRNA:   3'- gCG-CGGAG--------CUCGUCCAGCuC--AACG-CG- -5'
11458 3' -57.8 NC_003085.1 + 8743 0.67 0.516919
Target:  5'- gGCGCCggCGAG-AGGUCcaccgGCGCg -3'
miRNA:   3'- gCGCGGa-GCUCgUCCAGcucaaCGCG- -5'
11458 3' -57.8 NC_003085.1 + 610 0.67 0.516919
Target:  5'- gGCGCCguccUGGGCGcGcUCGAGgcugGCGCg -3'
miRNA:   3'- gCGCGGa---GCUCGUcC-AGCUCaa--CGCG- -5'
11458 3' -57.8 NC_003085.1 + 41418 0.67 0.515882
Target:  5'- --aGCCUCGGGCggcaacAGccauacgcucuccGUCGAGUUGgCGCg -3'
miRNA:   3'- gcgCGGAGCUCG------UC-------------CAGCUCAAC-GCG- -5'
11458 3' -57.8 NC_003085.1 + 44725 0.67 0.506585
Target:  5'- cCGCGuCUUCGuGCAcGGgaagcCGAGUUccGCGCu -3'
miRNA:   3'- -GCGC-GGAGCuCGU-CCa----GCUCAA--CGCG- -5'
11458 3' -57.8 NC_003085.1 + 26114 0.67 0.506585
Target:  5'- uGCGCCUCG-GC-GGcCGGcg-GCGCu -3'
miRNA:   3'- gCGCGGAGCuCGuCCaGCUcaaCGCG- -5'
11458 3' -57.8 NC_003085.1 + 27847 0.67 0.506585
Target:  5'- gGcCGUCUCGcGCGGGUCGcuc-GCGCc -3'
miRNA:   3'- gC-GCGGAGCuCGUCCAGCucaaCGCG- -5'
11458 3' -57.8 NC_003085.1 + 26207 0.67 0.506585
Target:  5'- uGCGCCUUGugcGCGGGcggCGcGGUgcgaaGCGCg -3'
miRNA:   3'- gCGCGGAGCu--CGUCCa--GC-UCAa----CGCG- -5'
11458 3' -57.8 NC_003085.1 + 22421 0.67 0.496341
Target:  5'- gGCGCUaccggCGAaugGCAGcGUCGAGc-GCGCa -3'
miRNA:   3'- gCGCGGa----GCU---CGUC-CAGCUCaaCGCG- -5'
11458 3' -57.8 NC_003085.1 + 821 0.67 0.496341
Target:  5'- gCGUGCCgcc-GCAGGUCGucgaGCGCg -3'
miRNA:   3'- -GCGCGGagcuCGUCCAGCucaaCGCG- -5'
11458 3' -57.8 NC_003085.1 + 23143 0.67 0.496341
Target:  5'- gCGCagaGCUUCGAGCAGGUgGuGU--CGCc -3'
miRNA:   3'- -GCG---CGGAGCUCGUCCAgCuCAacGCG- -5'
11458 3' -57.8 NC_003085.1 + 48828 0.67 0.496341
Target:  5'- aGCGCCUCGAcgAGGuccgcgccagccUCGAGc-GCGCc -3'
miRNA:   3'- gCGCGGAGCUcgUCC------------AGCUCaaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.