Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 29004 | 0.71 | 0.399693 |
Target: 5'- aUGCAGaCGUcCUUCAacgGCCCGCUGggGGa -3' miRNA: 3'- gACGUC-GUA-GAGGU---UGGGCGACuaCU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 14934 | 0.66 | 0.734063 |
Target: 5'- -cGUGGCG-CUCCAACUCGCgGAa-- -3' miRNA: 3'- gaCGUCGUaGAGGUUGGGCGaCUacu -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 7924 | 0.66 | 0.723174 |
Target: 5'- cCUGuCGGCGUgCaCCAACUCGUUGcgGAu -3' miRNA: 3'- -GAC-GUCGUA-GaGGUUGGGCGACuaCU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 6654 | 0.66 | 0.712189 |
Target: 5'- gUGCuGGCGUC-CCAACUCGUggacgccucccUGAUGGc -3' miRNA: 3'- gACG-UCGUAGaGGUUGGGCG-----------ACUACU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 40590 | 0.66 | 0.708877 |
Target: 5'- gUGCAGCAUUgCCGACCgggcgaggggccugUGCUGAcGGc -3' miRNA: 3'- gACGUCGUAGaGGUUGG--------------GCGACUaCU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 6713 | 0.67 | 0.667539 |
Target: 5'- cCUGCAccGCA-C-CCAugCCGCcGAUGAc -3' miRNA: 3'- -GACGU--CGUaGaGGUugGGCGaCUACU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 22023 | 0.68 | 0.588467 |
Target: 5'- aUGgAGCGUCUCUGGCCUGC--GUGGc -3' miRNA: 3'- gACgUCGUAGAGGUUGGGCGacUACU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 19001 | 0.7 | 0.500502 |
Target: 5'- -cGguGCAUCgUCgGGCCCGUUGGUa- -3' miRNA: 3'- gaCguCGUAG-AGgUUGGGCGACUAcu -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 46262 | 0.73 | 0.345768 |
Target: 5'- uUGCGGCAUCgggCCAggGCCCGC-GAgagGAc -3' miRNA: 3'- gACGUCGUAGa--GGU--UGGGCGaCUa--CU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 19134 | 0.71 | 0.418824 |
Target: 5'- -cGaCAGCGUCcgCCAggGCCCGCUGgGUGGc -3' miRNA: 3'- gaC-GUCGUAGa-GGU--UGGGCGAC-UACU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 46873 | 0.7 | 0.479375 |
Target: 5'- -cGCAGCGUCuUCCGugaCCGCgucGAUGGc -3' miRNA: 3'- gaCGUCGUAG-AGGUug-GGCGa--CUACU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 42334 | 0.69 | 0.543906 |
Target: 5'- gCUGCGGUGUCaCCAGCCgGCgcGUGAc -3' miRNA: 3'- -GACGUCGUAGaGGUUGGgCGacUACU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 23158 | 0.68 | 0.599727 |
Target: 5'- -gGCGGCAUCUcguaguuggCCAGCCCGacCUGcGUGGc -3' miRNA: 3'- gaCGUCGUAGA---------GGUUGGGC--GAC-UACU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 899 | 0.67 | 0.65626 |
Target: 5'- -aGgGGCAUCccgugCCAACCCGCUcggGAg -3' miRNA: 3'- gaCgUCGUAGa----GGUUGGGCGAcuaCU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 18472 | 0.67 | 0.667539 |
Target: 5'- -gGUcgAGCGUCUUCAuauACCCGaaGAUGAg -3' miRNA: 3'- gaCG--UCGUAGAGGU---UGGGCgaCUACU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 14905 | 0.67 | 0.678784 |
Target: 5'- gUGCGGCGcacgCgGGCCgGCUGGUGGc -3' miRNA: 3'- gACGUCGUaga-GgUUGGgCGACUACU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 34353 | 0.66 | 0.688865 |
Target: 5'- -cGCGGCG-CUCC-AUCCGCUcgucgagGGUGAg -3' miRNA: 3'- gaCGUCGUaGAGGuUGGGCGA-------CUACU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 17499 | 0.66 | 0.705557 |
Target: 5'- -gGgGGCAgUCgCCAGCCCGCcgaggaccuguccggUGAUGAa -3' miRNA: 3'- gaCgUCGU-AGaGGUUGGGCG---------------ACUACU- -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 23449 | 0.66 | 0.734063 |
Target: 5'- -cGCAGCGUCgCCAAUUCGUUGu--- -3' miRNA: 3'- gaCGUCGUAGaGGUUGGGCGACuacu -5' |
|||||||
11458 | 5' | -54.1 | NC_003085.1 | + | 25223 | 1.09 | 0.001052 |
Target: 5'- uCUGCAGCAUCUCCAACCCGCUGAUGAc -3' miRNA: 3'- -GACGUCGUAGAGGUUGGGCGACUACU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home