miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11459 3' -54.1 NC_003085.1 + 20180 0.66 0.776599
Target:  5'- -gGUgUACGCGUCGUUGCgcugcuggccgaauuCGGAC-UGg -3'
miRNA:   3'- agCAgGUGCGCAGCAACG---------------GUCUGuAC- -5'
11459 3' -54.1 NC_003085.1 + 41936 0.66 0.741316
Target:  5'- cUCGgcCCGCGCGUCcucGUCGGugAUGu -3'
miRNA:   3'- -AGCa-GGUGCGCAGcaaCGGUCugUAC- -5'
11459 3' -54.1 NC_003085.1 + 29535 0.66 0.730669
Target:  5'- gCGUCUugGCGcgggcgUCGUgcgGCaGGACGUGc -3'
miRNA:   3'- aGCAGGugCGC------AGCAa--CGgUCUGUAC- -5'
11459 3' -54.1 NC_003085.1 + 43264 0.66 0.730669
Target:  5'- cUCGgacUCCACGCGcaggagUGUguccgUGCUGGGCAUGg -3'
miRNA:   3'- -AGC---AGGUGCGCa-----GCA-----ACGGUCUGUAC- -5'
11459 3' -54.1 NC_003085.1 + 11123 0.67 0.698171
Target:  5'- uUCGUUggggCGCGCGUCGUcucucggaugUGCC-GACAg- -3'
miRNA:   3'- -AGCAG----GUGCGCAGCA----------ACGGuCUGUac -5'
11459 3' -54.1 NC_003085.1 + 42706 0.68 0.66508
Target:  5'- cCGUCCGCcacgGCG-CGgcagGCCGGGCAg- -3'
miRNA:   3'- aGCAGGUG----CGCaGCaa--CGGUCUGUac -5'
11459 3' -54.1 NC_003085.1 + 29719 0.68 0.631705
Target:  5'- gUCGUCgcUACcucgGCGUCGUcGCCcaGGACGUGg -3'
miRNA:   3'- -AGCAG--GUG----CGCAGCAaCGG--UCUGUAC- -5'
11459 3' -54.1 NC_003085.1 + 5744 0.68 0.609438
Target:  5'- gUGUCC-CGCGUCGauuggGCCauugacGGACGUGc -3'
miRNA:   3'- aGCAGGuGCGCAGCaa---CGG------UCUGUAC- -5'
11459 3' -54.1 NC_003085.1 + 38796 0.7 0.50069
Target:  5'- cUCGUCgCuGCGCuGUCGcucaGCCAGGCGUGu -3'
miRNA:   3'- -AGCAG-G-UGCG-CAGCaa--CGGUCUGUAC- -5'
11459 3' -54.1 NC_003085.1 + 23309 0.71 0.459519
Target:  5'- -gGUCCGCGaCGUCGgugGCCAG-CAg- -3'
miRNA:   3'- agCAGGUGC-GCAGCaa-CGGUCuGUac -5'
11459 3' -54.1 NC_003085.1 + 938 0.72 0.392111
Target:  5'- gCGUCgGCcGCGUCcgggUGCCAGACAg- -3'
miRNA:   3'- aGCAGgUG-CGCAGca--ACGGUCUGUac -5'
11459 3' -54.1 NC_003085.1 + 21448 0.73 0.374066
Target:  5'- cCGUCCACGUagccGUCGUUGaCgCAGACGc- -3'
miRNA:   3'- aGCAGGUGCG----CAGCAAC-G-GUCUGUac -5'
11459 3' -54.1 NC_003085.1 + 19999 0.73 0.339701
Target:  5'- aCGcgCC-CGCGUUGUUgaaGCCGGGCAUGg -3'
miRNA:   3'- aGCa-GGuGCGCAGCAA---CGGUCUGUAC- -5'
11459 3' -54.1 NC_003085.1 + 24881 1.09 0.001131
Target:  5'- gUCGUCCACGCGUCGUUGCCAGACAUGa -3'
miRNA:   3'- -AGCAGGUGCGCAGCAACGGUCUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.