miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11459 5' -61.1 NC_003085.1 + 18155 0.66 0.386326
Target:  5'- aGGCuucgGUGUCgggCGCGCCuGCcCGCGCuuACCGg -3'
miRNA:   3'- -CCG----UACAG---GCGCGG-CGcGUGCG--UGGC- -5'
11459 5' -61.1 NC_003085.1 + 48841 0.66 0.386326
Target:  5'- ----gGUCCGCGCCagccucgaGCGCGCccaggacgGCGCCa -3'
miRNA:   3'- ccguaCAGGCGCGG--------CGCGUG--------CGUGGc -5'
11459 5' -61.1 NC_003085.1 + 42230 0.66 0.386326
Target:  5'- gGGC-UGUCCGUagggGCaGCGC-UGCGCCa -3'
miRNA:   3'- -CCGuACAGGCG----CGgCGCGuGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 30801 0.66 0.386326
Target:  5'- -cCGUGagCGCGCCGCaGCAauCACCGc -3'
miRNA:   3'- ccGUACagGCGCGGCG-CGUgcGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 14514 0.66 0.383739
Target:  5'- aGGCGccUCCGCcggccagcaacuccGCCGCGUGCGC-CUGc -3'
miRNA:   3'- -CCGUacAGGCG--------------CGGCGCGUGCGuGGC- -5'
11459 5' -61.1 NC_003085.1 + 27404 0.66 0.377748
Target:  5'- cGCGUGguacCUGC-CCGCGgGCGCaaucGCCGg -3'
miRNA:   3'- cCGUACa---GGCGcGGCGCgUGCG----UGGC- -5'
11459 5' -61.1 NC_003085.1 + 14899 0.66 0.377748
Target:  5'- ---cUGgCUGUGCgGCGCACGCggGCCGg -3'
miRNA:   3'- ccguACaGGCGCGgCGCGUGCG--UGGC- -5'
11459 5' -61.1 NC_003085.1 + 24201 0.66 0.377748
Target:  5'- gGGCGcG-CCGacgacgacgccCGCCGCGgaGCGCACCa -3'
miRNA:   3'- -CCGUaCaGGC-----------GCGGCGCg-UGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 48478 0.66 0.376897
Target:  5'- uGGCGUGcUCCucggcaaGCGCCuCGUugaGCGCugCGa -3'
miRNA:   3'- -CCGUAC-AGG-------CGCGGcGCG---UGCGugGC- -5'
11459 5' -61.1 NC_003085.1 + 24624 0.66 0.3752
Target:  5'- aGGCGaGaaUCUGCGCCucgGCGUccugguugaaagccGCGCGCCGc -3'
miRNA:   3'- -CCGUaC--AGGCGCGG---CGCG--------------UGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 24187 0.67 0.369299
Target:  5'- cGuCAUcUCCaGCGCCGaGUACGCGCUGa -3'
miRNA:   3'- cC-GUAcAGG-CGCGGCgCGUGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 12432 0.67 0.369299
Target:  5'- aGGCcgGUGUCCGgGUCGCcacugaaggucaGCGCugggGCGCCa -3'
miRNA:   3'- -CCG--UACAGGCgCGGCG------------CGUG----CGUGGc -5'
11459 5' -61.1 NC_003085.1 + 16239 0.67 0.369299
Target:  5'- uGGCGUcGUCauccuCGUGCUGCGC-CGcCGCCu -3'
miRNA:   3'- -CCGUA-CAG-----GCGCGGCGCGuGC-GUGGc -5'
11459 5' -61.1 NC_003085.1 + 48735 0.67 0.360981
Target:  5'- cGCcUGUCCGUGagcggCGCGuCAgGCGCCa -3'
miRNA:   3'- cCGuACAGGCGCg----GCGC-GUgCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 11539 0.67 0.360981
Target:  5'- cGCGUucGUCgaGCGCCggggccauGCGCcaACGCACCGu -3'
miRNA:   3'- cCGUA--CAGg-CGCGG--------CGCG--UGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 33988 0.67 0.360981
Target:  5'- cGGCAcccCUGCGCCGCGuCugGguUCGc -3'
miRNA:   3'- -CCGUacaGGCGCGGCGC-GugCguGGC- -5'
11459 5' -61.1 NC_003085.1 + 38954 0.67 0.356053
Target:  5'- gGGCGUGcgcuuccgcggauucUCCaguGCGCCGCGCA-GCAggUCGg -3'
miRNA:   3'- -CCGUAC---------------AGG---CGCGGCGCGUgCGU--GGC- -5'
11459 5' -61.1 NC_003085.1 + 49291 0.67 0.352794
Target:  5'- uGGC-UG-CUGCGUCGCGUcgGCGUcCCGg -3'
miRNA:   3'- -CCGuACaGGCGCGGCGCG--UGCGuGGC- -5'
11459 5' -61.1 NC_003085.1 + 1576 0.67 0.352794
Target:  5'- uGCAguugCgGCGCgGCGUACGCguGCCGu -3'
miRNA:   3'- cCGUaca-GgCGCGgCGCGUGCG--UGGC- -5'
11459 5' -61.1 NC_003085.1 + 36957 0.67 0.352794
Target:  5'- aGGCAgggCCGCgggGCCaUGUugGCGCCGc -3'
miRNA:   3'- -CCGUacaGGCG---CGGcGCGugCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.