Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11460 | 3' | -53.8 | NC_003085.1 | + | 7848 | 0.67 | 0.698733 |
Target: 5'- gGCCAUGUUCGaGGAGAagcgcgcggaacuGGGGCUUgAGc -3' miRNA: 3'- -UGGUGCAGGCaCCUCU-------------CCUUGAAgUC- -5' |
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11460 | 3' | -53.8 | NC_003085.1 | + | 23238 | 0.71 | 0.470426 |
Target: 5'- cACCAUaUCC-UGGccGAGGGACUUCAGg -3' miRNA: 3'- -UGGUGcAGGcACCu-CUCCUUGAAGUC- -5' |
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11460 | 3' | -53.8 | NC_003085.1 | + | 24784 | 1.09 | 0.001213 |
Target: 5'- cACCACGUCCGUGGAGAGGAACUUCAGg -3' miRNA: 3'- -UGGUGCAGGCACCUCUCCUUGAAGUC- -5' |
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11460 | 3' | -53.8 | NC_003085.1 | + | 28206 | 0.69 | 0.566411 |
Target: 5'- cACCACcuuGUCCGUcGuccaguucgccaAGAGGGGCUUCGGa -3' miRNA: 3'- -UGGUG---CAGGCAcC------------UCUCCUUGAAGUC- -5' |
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11460 | 3' | -53.8 | NC_003085.1 | + | 30150 | 0.68 | 0.6555 |
Target: 5'- gGCCccCGUCaacuccagGGAGAGGAGCUUCu- -3' miRNA: 3'- -UGGu-GCAGgca-----CCUCUCCUUGAAGuc -5' |
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11460 | 3' | -53.8 | NC_003085.1 | + | 36071 | 0.67 | 0.710774 |
Target: 5'- gUCAUGUCCGUGGccGAcGAACUUCu- -3' miRNA: 3'- uGGUGCAGGCACCu-CUcCUUGAAGuc -5' |
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11460 | 3' | -53.8 | NC_003085.1 | + | 44569 | 0.66 | 0.764049 |
Target: 5'- gACUGCGUCUcaaGGAGGGGAcg-UCAGg -3' miRNA: 3'- -UGGUGCAGGca-CCUCUCCUugaAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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