miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11460 5' -61.9 NC_003085.1 + 23633 0.66 0.371243
Target:  5'- aGGCC-AGGUUcUCCaCCUCCGCgCGGGu -3'
miRNA:   3'- -UCGGcUCCAAcGGGaGGAGGCG-GCUC- -5'
11460 5' -61.9 NC_003085.1 + 44112 0.66 0.371243
Target:  5'- cGCCGAGucccugGUCCUUCUCCGCgGc- -3'
miRNA:   3'- uCGGCUCcaa---CGGGAGGAGGCGgCuc -5'
11460 5' -61.9 NC_003085.1 + 10252 0.66 0.362872
Target:  5'- uGGCCGAGGggGUCCguaccggagCCUgcgUUGCCGGc -3'
miRNA:   3'- -UCGGCUCCaaCGGGa--------GGA---GGCGGCUc -5'
11460 5' -61.9 NC_003085.1 + 6842 0.66 0.354632
Target:  5'- --aCGAGGggaacGCCgCgaaugUCUCCGCCGAGg -3'
miRNA:   3'- ucgGCUCCaa---CGG-Ga----GGAGGCGGCUC- -5'
11460 5' -61.9 NC_003085.1 + 33215 0.66 0.354632
Target:  5'- uGGCCGAGGcacucgGCCgggCUCCaugagCCGuuGAGc -3'
miRNA:   3'- -UCGGCUCCaa----CGG---GAGGa----GGCggCUC- -5'
11460 5' -61.9 NC_003085.1 + 25195 0.66 0.346526
Target:  5'- aGGUCGAG-UUGCgCCUCCU-UGCCGGa -3'
miRNA:   3'- -UCGGCUCcAACG-GGAGGAgGCGGCUc -5'
11460 5' -61.9 NC_003085.1 + 45031 0.66 0.333833
Target:  5'- cGUCaGGGaUGCucugccagucgccagCCUCCUCCGCCGGc -3'
miRNA:   3'- uCGGcUCCaACG---------------GGAGGAGGCGGCUc -5'
11460 5' -61.9 NC_003085.1 + 40230 0.67 0.300704
Target:  5'- cGCCauuGGUggcggGCUCUUCgCCGCCGGGg -3'
miRNA:   3'- uCGGcu-CCAa----CGGGAGGaGGCGGCUC- -5'
11460 5' -61.9 NC_003085.1 + 18693 0.67 0.300704
Target:  5'- cGGUCGAGGUcGCgCUgCUCUGCCu-- -3'
miRNA:   3'- -UCGGCUCCAaCGgGAgGAGGCGGcuc -5'
11460 5' -61.9 NC_003085.1 + 7341 0.67 0.300704
Target:  5'- cGCCGuGcauucgcUUGCCgUCCUCCGCCa-- -3'
miRNA:   3'- uCGGCuCc------AACGGgAGGAGGCGGcuc -5'
11460 5' -61.9 NC_003085.1 + 12769 0.67 0.286506
Target:  5'- uGGCCuGGGGUgaUGCCC-CUgCCGCCGu- -3'
miRNA:   3'- -UCGG-CUCCA--ACGGGaGGaGGCGGCuc -5'
11460 5' -61.9 NC_003085.1 + 14063 0.68 0.279607
Target:  5'- cGUCGAGGccaucugcgaGCgCCUCggaCUCCGCCGGGa -3'
miRNA:   3'- uCGGCUCCaa--------CG-GGAG---GAGGCGGCUC- -5'
11460 5' -61.9 NC_003085.1 + 14788 0.68 0.266207
Target:  5'- cGGCgCGGGGUgcaaaagGCCgacaUCCUCCG-CGAGg -3'
miRNA:   3'- -UCG-GCUCCAa------CGGg---AGGAGGCgGCUC- -5'
11460 5' -61.9 NC_003085.1 + 16882 0.69 0.234984
Target:  5'- cGUCGGGGcaaGCCCccucgCCUCCGCCa-- -3'
miRNA:   3'- uCGGCUCCaa-CGGGa----GGAGGCGGcuc -5'
11460 5' -61.9 NC_003085.1 + 25963 0.7 0.201636
Target:  5'- uGCCGAGGggaaUGCCC-CCUCCgagcaacuccgcGCgGAGc -3'
miRNA:   3'- uCGGCUCCa---ACGGGaGGAGG------------CGgCUC- -5'
11460 5' -61.9 NC_003085.1 + 22918 0.7 0.191469
Target:  5'- uGCCGGGGcgaaGCCCUCCgaggCCGCguCGAc -3'
miRNA:   3'- uCGGCUCCaa--CGGGAGGa---GGCG--GCUc -5'
11460 5' -61.9 NC_003085.1 + 26544 0.71 0.168001
Target:  5'- cGGCCucgGAGGgcuucGCCCcggcagCCUCCGCCGGa -3'
miRNA:   3'- -UCGG---CUCCaa---CGGGa-----GGAGGCGGCUc -5'
11460 5' -61.9 NC_003085.1 + 42027 0.71 0.151116
Target:  5'- cGGaCGAGGgcGCCUUCuCUCCaGCCGGGu -3'
miRNA:   3'- -UCgGCUCCaaCGGGAG-GAGG-CGGCUC- -5'
11460 5' -61.9 NC_003085.1 + 24818 0.91 0.004799
Target:  5'- aAGCCGAGGUU-CgCCUCCUCCGCCGAGg -3'
miRNA:   3'- -UCGGCUCCAAcG-GGAGGAGGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.