miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11461 3' -62.4 NC_003085.1 + 29735 0.66 0.350476
Target:  5'- cGUCGUCGCCcaggACguGGCCGCcGUCGCg -3'
miRNA:   3'- -CGGUGGCGG----UGguCCGGUGcCAGCGg -5'
11461 3' -62.4 NC_003085.1 + 7100 0.66 0.350476
Target:  5'- cGCCAUCcUCGCC-GGCCggaagACGGUcacgCGCCg -3'
miRNA:   3'- -CGGUGGcGGUGGuCCGG-----UGCCA----GCGG- -5'
11461 3' -62.4 NC_003085.1 + 3230 0.66 0.350476
Target:  5'- uGCCGgCGCUACCuGGgC-CGGcccacacacUCGCCc -3'
miRNA:   3'- -CGGUgGCGGUGGuCCgGuGCC---------AGCGG- -5'
11461 3' -62.4 NC_003085.1 + 24771 0.66 0.345695
Target:  5'- uGCCGCCGuCCAgcaccacguCCguggagaggaacuucAGGCUGCGGaaGCCg -3'
miRNA:   3'- -CGGUGGC-GGU---------GG---------------UCCGGUGCCagCGG- -5'
11461 3' -62.4 NC_003085.1 + 40722 0.66 0.342534
Target:  5'- aGCCGCUugGCCACgaAGGCgCGCaGGUagcacUGCCa -3'
miRNA:   3'- -CGGUGG--CGGUGg-UCCG-GUG-CCA-----GCGG- -5'
11461 3' -62.4 NC_003085.1 + 45387 0.66 0.342534
Target:  5'- gGgCGCU-CCACCAGGagGCGGagCGCCg -3'
miRNA:   3'- -CgGUGGcGGUGGUCCggUGCCa-GCGG- -5'
11461 3' -62.4 NC_003085.1 + 19898 0.66 0.341747
Target:  5'- gGCCGCCGaagacguCCGCguuGGCC-UGGUUGCUg -3'
miRNA:   3'- -CGGUGGC-------GGUGgu-CCGGuGCCAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 7775 0.66 0.339394
Target:  5'- aGCCAUCGUCGCgGcgagcgcauucgcGGCCcaacagggugggaaGCGGUCGUUg -3'
miRNA:   3'- -CGGUGGCGGUGgU-------------CCGG--------------UGCCAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 11394 0.66 0.336275
Target:  5'- cGCUGCCGucuccgcgacgcaCCACCacaugucGGGCgcauugaaggggaaGCGGUCGCCg -3'
miRNA:   3'- -CGGUGGC-------------GGUGG-------UCCGg-------------UGCCAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 3001 0.66 0.334723
Target:  5'- aCCGCuCcCCGCUGGGCgCACGGacgaCGCCc -3'
miRNA:   3'- cGGUG-GcGGUGGUCCG-GUGCCa---GCGG- -5'
11461 3' -62.4 NC_003085.1 + 675 0.66 0.333177
Target:  5'- cGUCGCCgGCCACCugucccgcguccGGCCuCGGgCGCg -3'
miRNA:   3'- -CGGUGG-CGGUGGu-----------CCGGuGCCaGCGg -5'
11461 3' -62.4 NC_003085.1 + 33377 0.66 0.327043
Target:  5'- -aCACCGCgCGCUcaGCCACuGUCGCa -3'
miRNA:   3'- cgGUGGCG-GUGGucCGGUGcCAGCGg -5'
11461 3' -62.4 NC_003085.1 + 38226 0.66 0.326283
Target:  5'- uGCCGCgGuagugcaCCACCuuGGGCUgACGGUUGCa -3'
miRNA:   3'- -CGGUGgC-------GGUGG--UCCGG-UGCCAGCGg -5'
11461 3' -62.4 NC_003085.1 + 29406 0.66 0.325523
Target:  5'- cGCCAgCGCgGCCAGcCCAUGGcggaggcucaggCGCUg -3'
miRNA:   3'- -CGGUgGCGgUGGUCcGGUGCCa-----------GCGG- -5'
11461 3' -62.4 NC_003085.1 + 18758 0.66 0.324765
Target:  5'- aGCCGCCGCUggagcgggcgauggACaaagcgaAGGCgGCuGUCGCUg -3'
miRNA:   3'- -CGGUGGCGG--------------UGg------UCCGgUGcCAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 21574 0.67 0.319495
Target:  5'- cGCC-CUG-CACCAGGUgACGGgcaugGCCg -3'
miRNA:   3'- -CGGuGGCgGUGGUCCGgUGCCag---CGG- -5'
11461 3' -62.4 NC_003085.1 + 5719 0.67 0.319495
Target:  5'- uCgGCCGuCUACUcgcGGGCCGaGGUCGUCg -3'
miRNA:   3'- cGgUGGC-GGUGG---UCCGGUgCCAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 47513 0.67 0.319495
Target:  5'- cGCCACUgcgauacgGCCACCGGGaCCgACGa--GCCc -3'
miRNA:   3'- -CGGUGG--------CGGUGGUCC-GG-UGCcagCGG- -5'
11461 3' -62.4 NC_003085.1 + 48855 0.67 0.319495
Target:  5'- cCCGCCguagGCCGCgaCGGGCuUGCaGUCGCCg -3'
miRNA:   3'- cGGUGG----CGGUG--GUCCG-GUGcCAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 26997 0.67 0.319495
Target:  5'- gGCUACCGCgaguggUGCaCGGGCCuuGGUgUGCCu -3'
miRNA:   3'- -CGGUGGCG------GUG-GUCCGGugCCA-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.