miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11462 3' -54.2 NC_003085.1 + 24072 1.12 0.000846
Target:  5'- aCGCGACAUCUGGACGACGGUGAAGCCc -3'
miRNA:   3'- -GCGCUGUAGACCUGCUGCCACUUCGG- -5'
11462 3' -54.2 NC_003085.1 + 37997 0.78 0.190644
Target:  5'- cCGUGuuuCGUCUGGAcccCGGCGGUGcAGCCc -3'
miRNA:   3'- -GCGCu--GUAGACCU---GCUGCCACuUCGG- -5'
11462 3' -54.2 NC_003085.1 + 39167 0.76 0.235779
Target:  5'- gGCGuCGUCUGGACGGauGUGcuGCCu -3'
miRNA:   3'- gCGCuGUAGACCUGCUgcCACuuCGG- -5'
11462 3' -54.2 NC_003085.1 + 34940 0.74 0.316712
Target:  5'- aCGCGGCGgaguugCUGGcCGGCGGaggcgccucacagGAAGCCg -3'
miRNA:   3'- -GCGCUGUa-----GACCuGCUGCCa------------CUUCGG- -5'
11462 3' -54.2 NC_003085.1 + 32134 0.74 0.319847
Target:  5'- uGCGACGggggcggCUGGugGcGCGGUGGguuacggcgucGGCCa -3'
miRNA:   3'- gCGCUGUa------GACCugC-UGCCACU-----------UCGG- -5'
11462 3' -54.2 NC_003085.1 + 38200 0.73 0.360982
Target:  5'- gGCGGCAaCUcGGGCGGCGGUGGcucguGCa -3'
miRNA:   3'- gCGCUGUaGA-CCUGCUGCCACUu----CGg -5'
11462 3' -54.2 NC_003085.1 + 21253 0.72 0.415006
Target:  5'- gGCGAa--CUGGACGACGGacaaggUGguGCCg -3'
miRNA:   3'- gCGCUguaGACCUGCUGCC------ACuuCGG- -5'
11462 3' -54.2 NC_003085.1 + 20947 0.72 0.434086
Target:  5'- cCGCGcGCGUCUGcACGagguGCGGUGGcuGGCCu -3'
miRNA:   3'- -GCGC-UGUAGACcUGC----UGCCACU--UCGG- -5'
11462 3' -54.2 NC_003085.1 + 2142 0.72 0.442836
Target:  5'- gGCGGCGcgCUGGA-GAUGGUGGAcaacgucGCCa -3'
miRNA:   3'- gCGCUGUa-GACCUgCUGCCACUU-------CGG- -5'
11462 3' -54.2 NC_003085.1 + 41543 0.72 0.443814
Target:  5'- aGUGACGUCUGcugccgccGCGGCGGcagucgcgGGAGCCa -3'
miRNA:   3'- gCGCUGUAGACc-------UGCUGCCa-------CUUCGG- -5'
11462 3' -54.2 NC_003085.1 + 25296 0.71 0.473712
Target:  5'- cCGCGACGgccggCcaggUGGACGACGccGUGGuGGCCa -3'
miRNA:   3'- -GCGCUGUa----G----ACCUGCUGC--CACU-UCGG- -5'
11462 3' -54.2 NC_003085.1 + 27541 0.71 0.473712
Target:  5'- uCGUGGcCAUCUccGGCGGCGGUGAcgucGCCa -3'
miRNA:   3'- -GCGCU-GUAGAc-CUGCUGCCACUu---CGG- -5'
11462 3' -54.2 NC_003085.1 + 41370 0.71 0.483902
Target:  5'- cCGCGucacccACGUCaugacGGugGugGGUGAcGGCCg -3'
miRNA:   3'- -GCGC------UGUAGa----CCugCugCCACU-UCGG- -5'
11462 3' -54.2 NC_003085.1 + 41259 0.71 0.504589
Target:  5'- gCGCGGCAggCUGGACuGGCGG----GCCa -3'
miRNA:   3'- -GCGCUGUa-GACCUG-CUGCCacuuCGG- -5'
11462 3' -54.2 NC_003085.1 + 19189 0.7 0.51297
Target:  5'- uGCGGCAUUcacguccgccugGGGCGGCGGgggcugGgcGCCg -3'
miRNA:   3'- gCGCUGUAGa-----------CCUGCUGCCa-----CuuCGG- -5'
11462 3' -54.2 NC_003085.1 + 24342 0.7 0.515074
Target:  5'- cCGCGGCGcUCUacGGCGACGG-GAcGGCCu -3'
miRNA:   3'- -GCGCUGU-AGAc-CUGCUGCCaCU-UCGG- -5'
11462 3' -54.2 NC_003085.1 + 4381 0.7 0.536301
Target:  5'- aCGCGAaggaGUUgUGGACGGCGGauaccgGAcAGCCg -3'
miRNA:   3'- -GCGCUg---UAG-ACCUGCUGCCa-----CU-UCGG- -5'
11462 3' -54.2 NC_003085.1 + 14689 0.7 0.54703
Target:  5'- cCGUGGCG-CUGGACGAaGGccaAGGCCg -3'
miRNA:   3'- -GCGCUGUaGACCUGCUgCCac-UUCGG- -5'
11462 3' -54.2 NC_003085.1 + 13797 0.7 0.54703
Target:  5'- gCGUGACgccaGUCUGcGugGA-GGUGgcGCCa -3'
miRNA:   3'- -GCGCUG----UAGAC-CugCUgCCACuuCGG- -5'
11462 3' -54.2 NC_003085.1 + 25561 0.7 0.54703
Target:  5'- uCGCGACuuUCUGcgcGugGACGGcUGcuGCCg -3'
miRNA:   3'- -GCGCUGu-AGAC---CugCUGCC-ACuuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.