miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11462 5' -58.9 NC_003085.1 + 36432 0.66 0.510369
Target:  5'- ---aGCCgGgacUCACCGUgCGGAgggcGGCGCc -3'
miRNA:   3'- cgcaCGGgC---AGUGGCAgGCCU----UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 16419 0.66 0.510369
Target:  5'- aGCGU-CCCaaccCACCGaagCCGGuagaGAGCGCg -3'
miRNA:   3'- -CGCAcGGGca--GUGGCa--GGCC----UUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 35262 0.66 0.510369
Target:  5'- cGCGgGCuuGUCGCaGcCCGGAcgcuggcacaGGUGCa -3'
miRNA:   3'- -CGCaCGggCAGUGgCaGGCCU----------UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 32466 0.66 0.509354
Target:  5'- cGCGcuuCUCGUCGCCGUcggcgucgcgggcCCGG-AGCGUc -3'
miRNA:   3'- -CGCac-GGGCAGUGGCA-------------GGCCuUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 7486 0.66 0.500259
Target:  5'- gGCGagGCgUGUCACUG---GGAAGCGCa -3'
miRNA:   3'- -CGCa-CGgGCAGUGGCaggCCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 44995 0.66 0.500259
Target:  5'- cCGUGCCC-UCGUCGUCgCGGAuggugauuucGCGCu -3'
miRNA:   3'- cGCACGGGcAGUGGCAG-GCCUu---------CGCG- -5'
11462 5' -58.9 NC_003085.1 + 9729 0.67 0.480313
Target:  5'- uGUGUGUCC-UCGgCGUCaUGGAguccagGGCGCg -3'
miRNA:   3'- -CGCACGGGcAGUgGCAG-GCCU------UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 25118 0.67 0.470486
Target:  5'- cCGU-CCCGUCGCCGUa---GAGCGCc -3'
miRNA:   3'- cGCAcGGGCAGUGGCAggccUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 22063 0.67 0.460763
Target:  5'- gGCGUGUuggacaaggCCaUCGCCGcCgCGGAagaGGCGCa -3'
miRNA:   3'- -CGCACG---------GGcAGUGGCaG-GCCU---UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 1113 0.67 0.460763
Target:  5'- aGCGaGCCCGUC-CCGauguccaucggCCGaGAGCGUg -3'
miRNA:   3'- -CGCaCGGGCAGuGGCa----------GGCcUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 45272 0.67 0.460763
Target:  5'- -gGUGagguuggaCCCGUCAcacCCGUCCGGuccuucgucggAGGCGUg -3'
miRNA:   3'- cgCAC--------GGGCAGU---GGCAGGCC-----------UUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 1983 0.67 0.459796
Target:  5'- cGCGUGCaugagcacCCGUCcacuucuACCGagCGGAugcggcguGGCGCg -3'
miRNA:   3'- -CGCACG--------GGCAG-------UGGCagGCCU--------UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 22745 0.67 0.451147
Target:  5'- gGCGccGCgCCGUCACCGcCCu---GCGCg -3'
miRNA:   3'- -CGCa-CG-GGCAGUGGCaGGccuuCGCG- -5'
11462 5' -58.9 NC_003085.1 + 10178 0.67 0.451147
Target:  5'- gGCGaGacaCCGcagCGCCGUagaGGAGGCGCg -3'
miRNA:   3'- -CGCaCg--GGCa--GUGGCAgg-CCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 34272 0.67 0.451147
Target:  5'- cGCG-GCgCUGgcgCACCGgcucagCCGGGccgucAGCGCa -3'
miRNA:   3'- -CGCaCG-GGCa--GUGGCa-----GGCCU-----UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 20980 0.67 0.451147
Target:  5'- cGCGuUGCgCGUCAgcaCGcagCCGGuGAGCGCc -3'
miRNA:   3'- -CGC-ACGgGCAGUg--GCa--GGCC-UUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 15422 0.67 0.451147
Target:  5'- aGCgGUGaguaugCCGUCACCaUCCGGAacgagAGCGg -3'
miRNA:   3'- -CG-CACg-----GGCAGUGGcAGGCCU-----UCGCg -5'
11462 5' -58.9 NC_003085.1 + 49032 0.67 0.451147
Target:  5'- cGUGUGaCUCGUagaCGCggccgagacuggCGUCCaGGGAGCGCa -3'
miRNA:   3'- -CGCAC-GGGCA---GUG------------GCAGG-CCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 8415 0.67 0.441642
Target:  5'- cGCGUagcaGCCCGccaaGCCGcCCaGGAGGaCGCc -3'
miRNA:   3'- -CGCA----CGGGCag--UGGCaGG-CCUUC-GCG- -5'
11462 5' -58.9 NC_003085.1 + 30329 0.67 0.441642
Target:  5'- aGCGgGCCCuGgcggaCGCUGUCgCGG-GGCGCa -3'
miRNA:   3'- -CGCaCGGG-Ca----GUGGCAG-GCCuUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.