Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11464 | 3' | -58.3 | NC_003085.1 | + | 26647 | 0.66 | 0.512209 |
|
Target: 5'- -aAUCggagUCGgggCCGUCGCcuccuGGGCGGGAg -3' miRNA: 3'- gaUAGg---AGCa--GGCAGCGu----CCCGCCUU- -5' |
|||||||
| 11464 | 3' | -58.3 | NC_003085.1 | + | 2676 | 0.66 | 0.512209 |
|
Target: 5'- ---gCCacCGUCauCGUCGCGGaGGCGGAGg -3' miRNA: 3'- gauaGGa-GCAG--GCAGCGUC-CCGCCUU- -5' |
|||||||
| 11464 | 3' | -58.3 | NC_003085.1 | + | 28210 | 0.67 | 0.42941 |
|
Target: 5'- ---aCCUUGUCCGUCGUccaguucgccaagaGGGGCuucGGAc -3' miRNA: 3'- gauaGGAGCAGGCAGCG--------------UCCCG---CCUu -5' |
|||||||
| 11464 | 3' | -58.3 | NC_003085.1 | + | 1948 | 0.68 | 0.395114 |
|
Target: 5'- -gGUCC-CGguggCCGuaUCGCAGuGGCGGAc -3' miRNA: 3'- gaUAGGaGCa---GGC--AGCGUC-CCGCCUu -5' |
|||||||
| 11464 | 3' | -58.3 | NC_003085.1 | + | 7450 | 0.69 | 0.335276 |
|
Target: 5'- ---cCCUCGUCCGUgccgacgcCGcCGGGGCaGGAAc -3' miRNA: 3'- gauaGGAGCAGGCA--------GC-GUCCCG-CCUU- -5' |
|||||||
| 11464 | 3' | -58.3 | NC_003085.1 | + | 526 | 0.69 | 0.319441 |
|
Target: 5'- uCUGUCCUCGUgacgacguUCGgcaGcCAGGGCGGGGu -3' miRNA: 3'- -GAUAGGAGCA--------GGCag-C-GUCCCGCCUU- -5' |
|||||||
| 11464 | 3' | -58.3 | NC_003085.1 | + | 27957 | 0.72 | 0.230194 |
|
Target: 5'- ----aCUCGUCCGcggUGUGGGGCGGGAa -3' miRNA: 3'- gauagGAGCAGGCa--GCGUCCCGCCUU- -5' |
|||||||
| 11464 | 3' | -58.3 | NC_003085.1 | + | 30753 | 0.73 | 0.176684 |
|
Target: 5'- -cGUCC-CGUCuCGUCagGCGGGGCGGGc -3' miRNA: 3'- gaUAGGaGCAG-GCAG--CGUCCCGCCUu -5' |
|||||||
| 11464 | 3' | -58.3 | NC_003085.1 | + | 23748 | 1.06 | 0.00069 |
|
Target: 5'- cCUAUCCUCGUCCGUCGCAGGGCGGAAg -3' miRNA: 3'- -GAUAGGAGCAGGCAGCGUCCCGCCUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home