miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11466 3' -55.7 NC_003085.1 + 19720 0.66 0.676455
Target:  5'- gGCGcGACGgCGGCcacguCCUGG-GCGACg- -3'
miRNA:   3'- -CGC-CUGCaGUCGu----GGACCuCGUUGac -5'
11466 3' -55.7 NC_003085.1 + 31967 0.66 0.673151
Target:  5'- gGCGGGCuggcgacugcccccGUUA-CGCCUGGGGCuggcGCUGc -3'
miRNA:   3'- -CGCCUG--------------CAGUcGUGGACCUCGu---UGAC- -5'
11466 3' -55.7 NC_003085.1 + 18570 0.66 0.658794
Target:  5'- -aGGACGgccaagcgcuguccaUCAGCAUCgaccugGGGGCGGCg- -3'
miRNA:   3'- cgCCUGC---------------AGUCGUGGa-----CCUCGUUGac -5'
11466 3' -55.7 NC_003085.1 + 17830 0.66 0.654367
Target:  5'- uGCGG-Ca--GGCcCCUGGGGCAguGCUGg -3'
miRNA:   3'- -CGCCuGcagUCGuGGACCUCGU--UGAC- -5'
11466 3' -55.7 NC_003085.1 + 30527 0.66 0.654367
Target:  5'- -aGGAgG-CGGCGCgUGGAGCAcaGCa- -3'
miRNA:   3'- cgCCUgCaGUCGUGgACCUCGU--UGac -5'
11466 3' -55.7 NC_003085.1 + 47357 0.66 0.654367
Target:  5'- uGUGGGCGcCgauGGCGCCgaGGugcGGCGGCUGc -3'
miRNA:   3'- -CGCCUGCaG---UCGUGGa-CC---UCGUUGAC- -5'
11466 3' -55.7 NC_003085.1 + 26122 0.66 0.643286
Target:  5'- gGCGGcCGgCGGCGCUUGGccggccagAGCGGCg- -3'
miRNA:   3'- -CGCCuGCaGUCGUGGACC--------UCGUUGac -5'
11466 3' -55.7 NC_003085.1 + 43521 0.66 0.632195
Target:  5'- cGUGGACGggaaCGGCGCCgaaGGCGGCg- -3'
miRNA:   3'- -CGCCUGCa---GUCGUGGaccUCGUUGac -5'
11466 3' -55.7 NC_003085.1 + 15116 0.66 0.632195
Target:  5'- aGCGGAUGg-AGCGCCgcgccgcgUGGuGCGACg- -3'
miRNA:   3'- -CGCCUGCagUCGUGG--------ACCuCGUUGac -5'
11466 3' -55.7 NC_003085.1 + 44516 0.66 0.621104
Target:  5'- cGCGGugGUgccCAGCACCcgccGGA-CGACUc -3'
miRNA:   3'- -CGCCugCA---GUCGUGGa---CCUcGUUGAc -5'
11466 3' -55.7 NC_003085.1 + 9439 0.66 0.621104
Target:  5'- cGCGGACGUgcCGGCGCUcaUGGAcgAGCUc -3'
miRNA:   3'- -CGCCUGCA--GUCGUGG--ACCUcgUUGAc -5'
11466 3' -55.7 NC_003085.1 + 8853 0.66 0.617778
Target:  5'- aGCGGcCGUCAGCACa-GGccccucgcccggucGGCAauGCUGc -3'
miRNA:   3'- -CGCCuGCAGUCGUGgaCC--------------UCGU--UGAC- -5'
11466 3' -55.7 NC_003085.1 + 18451 0.67 0.608916
Target:  5'- cGUGGACGUCcuggaggAGCGCgUGGAcuucaaacucGCAGCc- -3'
miRNA:   3'- -CGCCUGCAG-------UCGUGgACCU----------CGUUGac -5'
11466 3' -55.7 NC_003085.1 + 8329 0.67 0.586827
Target:  5'- -aGGGCacuUCcucaucgGGCGCgUGGAGCGGCUGg -3'
miRNA:   3'- cgCCUGc--AG-------UCGUGgACCUCGUUGAC- -5'
11466 3' -55.7 NC_003085.1 + 20948 0.67 0.565983
Target:  5'- cGCGcGCGUCuGCACgaGGuGCGgugGCUGg -3'
miRNA:   3'- -CGCcUGCAGuCGUGgaCCuCGU---UGAC- -5'
11466 3' -55.7 NC_003085.1 + 44684 0.67 0.565983
Target:  5'- gGCGGAUGcCAGCACCcGaGAGCc---- -3'
miRNA:   3'- -CGCCUGCaGUCGUGGaC-CUCGuugac -5'
11466 3' -55.7 NC_003085.1 + 31157 0.67 0.565983
Target:  5'- uCGGACGgcCAGCGCC-GGGGCGuGCa- -3'
miRNA:   3'- cGCCUGCa-GUCGUGGaCCUCGU-UGac -5'
11466 3' -55.7 NC_003085.1 + 32907 0.68 0.555088
Target:  5'- cCGGGCGcCAcGCAgUUGGAGUcGCUGc -3'
miRNA:   3'- cGCCUGCaGU-CGUgGACCUCGuUGAC- -5'
11466 3' -55.7 NC_003085.1 + 27938 0.68 0.544255
Target:  5'- cGCaGGGCGUCAGCGCC----GCGACg- -3'
miRNA:   3'- -CG-CCUGCAGUCGUGGaccuCGUUGac -5'
11466 3' -55.7 NC_003085.1 + 18076 0.68 0.533493
Target:  5'- uCGGACaagCGGCagugggaguugGCCUGGAaGCGGCUGc -3'
miRNA:   3'- cGCCUGca-GUCG-----------UGGACCU-CGUUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.