miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11466 3' -55.7 NC_003085.1 + 19309 0.68 0.522806
Target:  5'- gGCGGgggugacguccuGCGUgGGCugCUGGGGcCGGCg- -3'
miRNA:   3'- -CGCC------------UGCAgUCGugGACCUC-GUUGac -5'
11466 3' -55.7 NC_003085.1 + 33031 0.68 0.522806
Target:  5'- --uGACGUCGGCGCCUGGAuauGgGGCc- -3'
miRNA:   3'- cgcCUGCAGUCGUGGACCU---CgUUGac -5'
11466 3' -55.7 NC_003085.1 + 15702 0.68 0.522806
Target:  5'- aCGGACGcccaAGCcugACUUGGAGCGAgUGa -3'
miRNA:   3'- cGCCUGCag--UCG---UGGACCUCGUUgAC- -5'
11466 3' -55.7 NC_003085.1 + 18121 0.68 0.501691
Target:  5'- cGCGGGCGggaCGGCcgGCCUGGGaCGucuGCUGa -3'
miRNA:   3'- -CGCCUGCa--GUCG--UGGACCUcGU---UGAC- -5'
11466 3' -55.7 NC_003085.1 + 34296 0.69 0.491274
Target:  5'- cCGGGcCGUCAGCGCagagGGGGCAGu-- -3'
miRNA:   3'- cGCCU-GCAGUCGUGga--CCUCGUUgac -5'
11466 3' -55.7 NC_003085.1 + 47873 0.69 0.480959
Target:  5'- aGCGaGACGUCAGCGCgUGcGGCcuGCUc -3'
miRNA:   3'- -CGC-CUGCAGUCGUGgACcUCGu-UGAc -5'
11466 3' -55.7 NC_003085.1 + 13580 0.7 0.440807
Target:  5'- cGUGGACGUgGGCACC-GGAGgcGCg- -3'
miRNA:   3'- -CGCCUGCAgUCGUGGaCCUCguUGac -5'
11466 3' -55.7 NC_003085.1 + 6272 0.7 0.431068
Target:  5'- -aGGACGccgcgaAGUACCgcgcggcggUGGAGCGACUGg -3'
miRNA:   3'- cgCCUGCag----UCGUGG---------ACCUCGUUGAC- -5'
11466 3' -55.7 NC_003085.1 + 41023 0.7 0.421457
Target:  5'- cGUGGGCGUCgcuGGCGuccuCCUGG-GCGGCUu -3'
miRNA:   3'- -CGCCUGCAG---UCGU----GGACCuCGUUGAc -5'
11466 3' -55.7 NC_003085.1 + 48747 0.7 0.411976
Target:  5'- aGCGGcGCGUCAgGCGCCacgcGGAguugccccgugGCGACUGg -3'
miRNA:   3'- -CGCC-UGCAGU-CGUGGa---CCU-----------CGUUGAC- -5'
11466 3' -55.7 NC_003085.1 + 19189 0.7 0.393416
Target:  5'- uGCGGcauucACGUC--CGCCUGGGGCGGCg- -3'
miRNA:   3'- -CGCC-----UGCAGucGUGGACCUCGUUGac -5'
11466 3' -55.7 NC_003085.1 + 5619 0.71 0.384342
Target:  5'- cGCGGugGUggacgGGCugCUGGAGC-GCUc -3'
miRNA:   3'- -CGCCugCAg----UCGugGACCUCGuUGAc -5'
11466 3' -55.7 NC_003085.1 + 26218 0.71 0.367487
Target:  5'- cGCGGGCGgcgcggugcgaagcgCGGCGgccgUCUGGAGCAGCc- -3'
miRNA:   3'- -CGCCUGCa--------------GUCGU----GGACCUCGUUGac -5'
11466 3' -55.7 NC_003085.1 + 48664 0.71 0.349457
Target:  5'- cGCGGACGUCcaccGUgGCCUGGGGCcACa- -3'
miRNA:   3'- -CGCCUGCAGu---CG-UGGACCUCGuUGac -5'
11466 3' -55.7 NC_003085.1 + 4130 0.71 0.341096
Target:  5'- -gGGACucCAGCGCCgcucuacGGAGCGACUGc -3'
miRNA:   3'- cgCCUGcaGUCGUGGa------CCUCGUUGAC- -5'
11466 3' -55.7 NC_003085.1 + 24843 0.72 0.332881
Target:  5'- -aGGugaaGCGcugCAGCACCUGGAGCGAgUUGg -3'
miRNA:   3'- cgCC----UGCa--GUCGUGGACCUCGUU-GAC- -5'
11466 3' -55.7 NC_003085.1 + 6671 0.73 0.286659
Target:  5'- cGUGGACGcCucccugauGGC-CCUGGAGCGGCUu -3'
miRNA:   3'- -CGCCUGCaG--------UCGuGGACCUCGUUGAc -5'
11466 3' -55.7 NC_003085.1 + 40494 0.73 0.279465
Target:  5'- gGCGGGCGUCGucgaGCC-GGAGCcGCUGa -3'
miRNA:   3'- -CGCCUGCAGUcg--UGGaCCUCGuUGAC- -5'
11466 3' -55.7 NC_003085.1 + 31913 0.73 0.272416
Target:  5'- gGCGGACGa-GGCACg-GGAGCAGCa- -3'
miRNA:   3'- -CGCCUGCagUCGUGgaCCUCGUUGac -5'
11466 3' -55.7 NC_003085.1 + 42085 0.73 0.258747
Target:  5'- cGCGGGCGccgUCGGCcucguaCUGGAGCGGCg- -3'
miRNA:   3'- -CGCCUGC---AGUCGug----GACCUCGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.