miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11466 5' -59.6 NC_003085.1 + 40981 0.66 0.474583
Target:  5'- gCUCgcaAGCGGCaaGGGCuggcccAGCGGCGUCg- -3'
miRNA:   3'- -GAG---UCGCCGggCUCG------UUGCCGUAGgc -5'
11466 5' -59.6 NC_003085.1 + 31113 0.66 0.474583
Target:  5'- --gAGCGGCucaaccCCGAGCAGCGcGCcgaGUUCGu -3'
miRNA:   3'- gagUCGCCG------GGCUCGUUGC-CG---UAGGC- -5'
11466 5' -59.6 NC_003085.1 + 22724 0.66 0.474583
Target:  5'- -gCGGCGGCugCCGAGaagcacuCGGC-UCCGa -3'
miRNA:   3'- gaGUCGCCG--GGCUCguu----GCCGuAGGC- -5'
11466 5' -59.6 NC_003085.1 + 8370 0.66 0.474583
Target:  5'- --gGGUGGCCgGAGcCAGcCGGaAUCCGg -3'
miRNA:   3'- gagUCGCCGGgCUC-GUU-GCCgUAGGC- -5'
11466 5' -59.6 NC_003085.1 + 26221 0.66 0.474583
Target:  5'- --gGGCGGCgCGGugcgaagcGCGGCGGcCGUCUGg -3'
miRNA:   3'- gagUCGCCGgGCU--------CGUUGCC-GUAGGC- -5'
11466 5' -59.6 NC_003085.1 + 38216 0.66 0.474583
Target:  5'- -gCGGUGGCUCGuGCAcucucgACGGCAgcacgUCGg -3'
miRNA:   3'- gaGUCGCCGGGCuCGU------UGCCGUa----GGC- -5'
11466 5' -59.6 NC_003085.1 + 32945 0.66 0.474583
Target:  5'- gCUCaacaGGCGcGCCUGccaugcuugcGGCGAUGGCAggCCGg -3'
miRNA:   3'- -GAG----UCGC-CGGGC----------UCGUUGCCGUa-GGC- -5'
11466 5' -59.6 NC_003085.1 + 47148 0.66 0.474583
Target:  5'- -gCGGCGGCCgGuGGCGA-GGCAggCCa -3'
miRNA:   3'- gaGUCGCCGGgC-UCGUUgCCGUa-GGc -5'
11466 5' -59.6 NC_003085.1 + 39334 0.66 0.468654
Target:  5'- ---cGCGGCCUggauaccugcgugagGAGUacuccuguGACGGCGUCCa -3'
miRNA:   3'- gaguCGCCGGG---------------CUCG--------UUGCCGUAGGc -5'
11466 5' -59.6 NC_003085.1 + 43509 0.66 0.464722
Target:  5'- -cCAGCaGCCCG-GCGuggacgggaACGGCG-CCGa -3'
miRNA:   3'- gaGUCGcCGGGCuCGU---------UGCCGUaGGC- -5'
11466 5' -59.6 NC_003085.1 + 27651 0.66 0.458856
Target:  5'- gCUCGGCGGCCuUGGGCGccaacuccuugucgaAggugaacuCGGCGUUCGc -3'
miRNA:   3'- -GAGUCGCCGG-GCUCGU---------------U--------GCCGUAGGC- -5'
11466 5' -59.6 NC_003085.1 + 6177 0.66 0.454968
Target:  5'- aUCAGCcuGGCUCGuGcCGACGGUG-CCGa -3'
miRNA:   3'- gAGUCG--CCGGGCuC-GUUGCCGUaGGC- -5'
11466 5' -59.6 NC_003085.1 + 47948 0.66 0.454968
Target:  5'- aCUCGGCugccucuuGCCCGAGCGcCGGaCGggCCGc -3'
miRNA:   3'- -GAGUCGc-------CGGGCUCGUuGCC-GUa-GGC- -5'
11466 5' -59.6 NC_003085.1 + 47392 0.66 0.454968
Target:  5'- gCUCGucGCGucaccGUCCGGGCcuUGGCAUCCa -3'
miRNA:   3'- -GAGU--CGC-----CGGGCUCGuuGCCGUAGGc -5'
11466 5' -59.6 NC_003085.1 + 9894 0.66 0.445326
Target:  5'- -cCAGUGGCgCCGuaguacgcAGCuGCGGCAgucCCGa -3'
miRNA:   3'- gaGUCGCCG-GGC--------UCGuUGCCGUa--GGC- -5'
11466 5' -59.6 NC_003085.1 + 2764 0.66 0.4358
Target:  5'- aCUCcGCuGGCCgGAagcagGCAGCGGCGgcgcUCCa -3'
miRNA:   3'- -GAGuCG-CCGGgCU-----CGUUGCCGU----AGGc -5'
11466 5' -59.6 NC_003085.1 + 48523 0.66 0.4358
Target:  5'- uCUCGGCGGCgaGGGCGcgGGCcuUCCa -3'
miRNA:   3'- -GAGUCGCCGggCUCGUugCCGu-AGGc -5'
11466 5' -59.6 NC_003085.1 + 48415 0.66 0.4358
Target:  5'- cCUCGGCGGCgCUG-GCuuccuccgcaugGACGGCGaggCCGc -3'
miRNA:   3'- -GAGUCGCCG-GGCuCG------------UUGCCGUa--GGC- -5'
11466 5' -59.6 NC_003085.1 + 19000 0.66 0.4358
Target:  5'- -cCGGUgcaucgucgGGCCCGuuGGUAGCGGCAagUCCu -3'
miRNA:   3'- gaGUCG---------CCGGGC--UCGUUGCCGU--AGGc -5'
11466 5' -59.6 NC_003085.1 + 5835 0.66 0.4358
Target:  5'- gUCAGCccugcaGGUCCGGGacuggGACGGCA-CCGu -3'
miRNA:   3'- gAGUCG------CCGGGCUCg----UUGCCGUaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.