miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11467 3' -58.9 NC_003085.1 + 38905 0.66 0.519717
Target:  5'- ---cGGCGCCGccgacucucgcAAGgCGGgGUUGCCCg -3'
miRNA:   3'- cucuCUGCGGC-----------UUCgGUCgCAGCGGG- -5'
11467 3' -58.9 NC_003085.1 + 39006 0.66 0.519717
Target:  5'- cGAGGGGCGCCaAAGCgCcGCGgaGCCg -3'
miRNA:   3'- -CUCUCUGCGGcUUCG-GuCGCagCGGg -5'
11467 3' -58.9 NC_003085.1 + 26676 0.66 0.519717
Target:  5'- cGGGAG-CgGCCGuuGCCGcuGcCGUCGCCa -3'
miRNA:   3'- -CUCUCuG-CGGCuuCGGU--C-GCAGCGGg -5'
11467 3' -58.9 NC_003085.1 + 3794 0.66 0.519717
Target:  5'- uGAcGGACGCCGAAGC-GGCGacggUGCUg -3'
miRNA:   3'- -CUcUCUGCGGCUUCGgUCGCa---GCGGg -5'
11467 3' -58.9 NC_003085.1 + 5101 0.66 0.519717
Target:  5'- cAGuGACGuuGAcgcgggauuGGCCGcccucucccGCGUCGCCg -3'
miRNA:   3'- cUCuCUGCggCU---------UCGGU---------CGCAGCGGg -5'
11467 3' -58.9 NC_003085.1 + 14512 0.66 0.50941
Target:  5'- -uGAGGCGCCuccgccGGCCAgcaacuccgccGCGUgCGCCUg -3'
miRNA:   3'- cuCUCUGCGGcu----UCGGU-----------CGCA-GCGGG- -5'
11467 3' -58.9 NC_003085.1 + 8287 0.66 0.50941
Target:  5'- --uGGACGCUGGAGCCcc--UUGCCCa -3'
miRNA:   3'- cucUCUGCGGCUUCGGucgcAGCGGG- -5'
11467 3' -58.9 NC_003085.1 + 15866 0.66 0.50941
Target:  5'- -uGAG-CGCCGAAGCCGcuucaugccaccGCuucggcaacauGUCGCCg -3'
miRNA:   3'- cuCUCuGCGGCUUCGGU------------CG-----------CAGCGGg -5'
11467 3' -58.9 NC_003085.1 + 5612 0.66 0.50941
Target:  5'- uGAGuGACGCgGugguggacGGGCUgcuggAGCGcUCGCCCu -3'
miRNA:   3'- -CUCuCUGCGgC--------UUCGG-----UCGC-AGCGGG- -5'
11467 3' -58.9 NC_003085.1 + 26805 0.66 0.50941
Target:  5'- cGGAGACGg-GAuucGGCCAGUGaUGCCCc -3'
miRNA:   3'- cUCUCUGCggCU---UCGGUCGCaGCGGG- -5'
11467 3' -58.9 NC_003085.1 + 11343 0.66 0.50941
Target:  5'- cGAG-GugGCgGAAGaacuCGGCGUCaGCCa -3'
miRNA:   3'- -CUCuCugCGgCUUCg---GUCGCAG-CGGg -5'
11467 3' -58.9 NC_003085.1 + 23834 0.66 0.49919
Target:  5'- -cGGGGCGCCc-GGCCuuCGUCGUCUc -3'
miRNA:   3'- cuCUCUGCGGcuUCGGucGCAGCGGG- -5'
11467 3' -58.9 NC_003085.1 + 9091 0.66 0.49919
Target:  5'- cAGAGgcgucaGCGCCGcGGGCagCAGCGgcUUGCCCa -3'
miRNA:   3'- cUCUC------UGCGGC-UUCG--GUCGC--AGCGGG- -5'
11467 3' -58.9 NC_003085.1 + 41758 0.66 0.49919
Target:  5'- --cGGACGCCc-GGCCAGCcuggaaGCCCa -3'
miRNA:   3'- cucUCUGCGGcuUCGGUCGcag---CGGG- -5'
11467 3' -58.9 NC_003085.1 + 38828 0.66 0.49919
Target:  5'- uGAGcaGGGCGCacu-GCC-GCGUCGUCCc -3'
miRNA:   3'- -CUC--UCUGCGgcuuCGGuCGCAGCGGG- -5'
11467 3' -58.9 NC_003085.1 + 4776 0.66 0.49919
Target:  5'- uGAG-GAC-UUGGAGCCuGCGUCcaGCCCc -3'
miRNA:   3'- -CUCuCUGcGGCUUCGGuCGCAG--CGGG- -5'
11467 3' -58.9 NC_003085.1 + 8431 0.66 0.49919
Target:  5'- --aAGcCGCCcaggaGGAcGCCAGCGaCGCCCa -3'
miRNA:   3'- cucUCuGCGG-----CUU-CGGUCGCaGCGGG- -5'
11467 3' -58.9 NC_003085.1 + 45924 0.66 0.498173
Target:  5'- aGAGAGGCaGCCaGAGucgccacggguccGCguagagcuuguaCAGCGUCGCCUu -3'
miRNA:   3'- -CUCUCUG-CGG-CUU-------------CG------------GUCGCAGCGGG- -5'
11467 3' -58.9 NC_003085.1 + 24202 0.66 0.489062
Target:  5'- -cGAGuacGCGCUGAAGCaguacGCGgUGCCCg -3'
miRNA:   3'- cuCUC---UGCGGCUUCGgu---CGCaGCGGG- -5'
11467 3' -58.9 NC_003085.1 + 44234 0.66 0.489062
Target:  5'- uGGAGGCcgcuuccuGCCG-GGCC-GCGUCGCgCu -3'
miRNA:   3'- cUCUCUG--------CGGCuUCGGuCGCAGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.