miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11468 3' -55.9 NC_003085.1 + 7382 0.66 0.636567
Target:  5'- aGCCGCAGCAAaucgGCAUC-GuCUUCa- -3'
miRNA:   3'- cCGGCGUCGUUga--CGUGGaC-GAAGac -5'
11468 3' -55.9 NC_003085.1 + 22037 0.66 0.636567
Target:  5'- gGGCUGCgcuguaccGGCGAUUGCGCCcGCgggCa- -3'
miRNA:   3'- -CCGGCG--------UCGUUGACGUGGaCGaa-Gac -5'
11468 3' -55.9 NC_003085.1 + 39564 0.66 0.636567
Target:  5'- uGCCGCAGCuGCguacuacgGCGCCacugGCaagCUGg -3'
miRNA:   3'- cCGGCGUCGuUGa-------CGUGGa---CGaa-GAC- -5'
11468 3' -55.9 NC_003085.1 + 29327 0.66 0.625354
Target:  5'- uGGuaGCGGUAGCUGCGCagcGCcUCUa -3'
miRNA:   3'- -CCggCGUCGUUGACGUGga-CGaAGAc -5'
11468 3' -55.9 NC_003085.1 + 46680 0.66 0.614149
Target:  5'- cGCCGCcuggAGCGccGCcGCuGCCUGCUUCc- -3'
miRNA:   3'- cCGGCG----UCGU--UGaCG-UGGACGAAGac -5'
11468 3' -55.9 NC_003085.1 + 18366 0.66 0.614149
Target:  5'- aGGCCGUggAGUcGCUGUcCCUGCgcgugcCUGa -3'
miRNA:   3'- -CCGGCG--UCGuUGACGuGGACGaa----GAC- -5'
11468 3' -55.9 NC_003085.1 + 18816 0.66 0.614149
Target:  5'- uGCCGCAGCGACU-CGCCacgGUagUUGa -3'
miRNA:   3'- cCGGCGUCGUUGAcGUGGa--CGaaGAC- -5'
11468 3' -55.9 NC_003085.1 + 25432 0.66 0.602959
Target:  5'- cGGCUgaGCAGCAcugaGCgGCGgCCgGUUUCUGg -3'
miRNA:   3'- -CCGG--CGUCGU----UGaCGU-GGaCGAAGAC- -5'
11468 3' -55.9 NC_003085.1 + 4246 0.66 0.602959
Target:  5'- gGGCCGCAGCGcuucGC-GCGCUUGgCcUCa- -3'
miRNA:   3'- -CCGGCGUCGU----UGaCGUGGAC-GaAGac -5'
11468 3' -55.9 NC_003085.1 + 19701 0.66 0.602959
Target:  5'- aGGCgCGCGGCGGCaucUGCACCUucgaGCa---- -3'
miRNA:   3'- -CCG-GCGUCGUUG---ACGUGGA----CGaagac -5'
11468 3' -55.9 NC_003085.1 + 968 0.66 0.591796
Target:  5'- aGGUCGCAGCGcucaACgagGCGCUUGCc---- -3'
miRNA:   3'- -CCGGCGUCGU----UGa--CGUGGACGaagac -5'
11468 3' -55.9 NC_003085.1 + 31169 0.66 0.580667
Target:  5'- cGCCGgGGCG--UGCACCgcccggugGCUUCUu -3'
miRNA:   3'- cCGGCgUCGUugACGUGGa-------CGAAGAc -5'
11468 3' -55.9 NC_003085.1 + 37289 0.66 0.580667
Target:  5'- cGCgGaCAGCGAC-GCACCUGCg---- -3'
miRNA:   3'- cCGgC-GUCGUUGaCGUGGACGaagac -5'
11468 3' -55.9 NC_003085.1 + 14996 0.67 0.568478
Target:  5'- uGGCCuGUcgucgugagccagAGCAACUGgACUUGCcgCUGg -3'
miRNA:   3'- -CCGG-CG-------------UCGUUGACgUGGACGaaGAC- -5'
11468 3' -55.9 NC_003085.1 + 20608 0.67 0.558552
Target:  5'- cGCCGCggaagucgGGCGGCgcggGUGCUUGCUUCc- -3'
miRNA:   3'- cCGGCG--------UCGUUGa---CGUGGACGAAGac -5'
11468 3' -55.9 NC_003085.1 + 36558 0.67 0.558552
Target:  5'- cGGCCGUGGCGgggucgccAUUGCACgggagGCUUCg- -3'
miRNA:   3'- -CCGGCGUCGU--------UGACGUGga---CGAAGac -5'
11468 3' -55.9 NC_003085.1 + 28882 0.67 0.547582
Target:  5'- uGGCCGUAcaGGCUGgcCAUCUGCgUCUGg -3'
miRNA:   3'- -CCGGCGUcgUUGAC--GUGGACGaAGAC- -5'
11468 3' -55.9 NC_003085.1 + 36962 0.67 0.536681
Target:  5'- gGGCCGCGGggcCAugUugGCGCC-GCUUCg- -3'
miRNA:   3'- -CCGGCGUC---GUugA--CGUGGaCGAAGac -5'
11468 3' -55.9 NC_003085.1 + 48699 0.67 0.536681
Target:  5'- aGGCCGCaAGCAACUGCGgcgacgaacuCCgGCa---- -3'
miRNA:   3'- -CCGGCG-UCGUUGACGU----------GGaCGaagac -5'
11468 3' -55.9 NC_003085.1 + 14523 0.67 0.515115
Target:  5'- cGCCGgcCAGCAACuccgccgcgUGCGCCUGCaUCc- -3'
miRNA:   3'- cCGGC--GUCGUUG---------ACGUGGACGaAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.