miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
11469	3'	-52.6	NC_003085.1	+	47713	0.67	0.80192
	Target:  5'- cGUCGAcugcugcgccugCUGACGGGcGCGGUgCGCGu -3' miRNA:   3'- -CAGCUaa----------GGCUGUUCaUGCCAgGCGC- -5'
11469	3'	-52.6	NC_003085.1	+	8316	0.67	0.77601
	Target:  5'- cGUUGGaggcaUCCGGCcagcAGUACGGggugCCGCGc -3' miRNA:   3'- -CAGCUa----AGGCUGu---UCAUGCCa---GGCGC- -5'
11469	3'	-52.6	NC_003085.1	+	7519	0.67	0.77601
	Target:  5'- cUCGGUggCGGCAAGUGgGGccaugCCGUGg -3' miRNA:   3'- cAGCUAagGCUGUUCAUgCCa----GGCGC- -5'
11469	3'	-52.6	NC_003085.1	+	21467	0.68	0.755364
	Target:  5'- -aCGuucgCCGACAAGgGCGGcCUGCGc -3' miRNA:   3'- caGCuaa-GGCUGUUCaUGCCaGGCGC- -5'
11469	3'	-52.6	NC_003085.1	+	9432	0.69	0.712613
	Target:  5'- gGUCGAcguagUCCGGCccGUACGGgaagcgggCCGUGg -3' miRNA:   3'- -CAGCUa----AGGCUGuuCAUGCCa-------GGCGC- -5'
11469	3'	-52.6	NC_003085.1	+	17059	0.69	0.6907
	Target:  5'- uUCGAgggcgUCGAgAAGUACGG-CCGCc -3' miRNA:   3'- cAGCUaa---GGCUgUUCAUGCCaGGCGc -5'
11469	3'	-52.6	NC_003085.1	+	2342	0.69	0.6907
	Target:  5'- aUCGGUUgCGACAuccgggaggcgcAGUGCGaGgCCGCGg -3' miRNA:   3'- cAGCUAAgGCUGU------------UCAUGC-CaGGCGC- -5'
11469	3'	-52.6	NC_003085.1	+	4932	0.72	0.53561
	Target:  5'- cGUCGAaagagucgUCCGGCGGGUGCuGGgcaccaCCGCGc -3' miRNA:   3'- -CAGCUa-------AGGCUGUUCAUG-CCa-----GGCGC- -5'
11469	3'	-52.6	NC_003085.1	+	16174	0.72	0.493023
	Target:  5'- gGUCGAUugccagggcccUCUGACAGGUACGcUCgCGCGc -3' miRNA:   3'- -CAGCUA-----------AGGCUGUUCAUGCcAG-GCGC- -5'
11469	3'	-52.6	NC_003085.1	+	21083	1.08	0.002249
	Target:  5'- uGUCGAUUCCGACAAGUACGGUCCGCGc -3' miRNA:   3'- -CAGCUAAGGCUGUUCAUGCCAGGCGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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