miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11469 5' -54 NC_003085.1 + 26705 0.66 0.76828
Target:  5'- aCCGCGGcgGGCGucGUcggcgcgggugucggAGCCGAGUgCu -3'
miRNA:   3'- cGGCGCCuaCCGC--UA---------------UCGGUUUAgGu -5'
11469 5' -54 NC_003085.1 + 32457 0.66 0.764132
Target:  5'- cCCGCGGccucAUGGaUGAgcuacUGGCCGAggCCAa -3'
miRNA:   3'- cGGCGCC----UACC-GCU-----AUCGGUUuaGGU- -5'
11469 5' -54 NC_003085.1 + 29424 0.66 0.743068
Target:  5'- gGgCGCGGgcGGCGGcaauGCCGuccUCCAg -3'
miRNA:   3'- -CgGCGCCuaCCGCUau--CGGUuu-AGGU- -5'
11469 5' -54 NC_003085.1 + 15944 0.67 0.699635
Target:  5'- cGCCaaGCgGGAUGGCGAUGacgucacuucGCCGGaaacacGUCCu -3'
miRNA:   3'- -CGG--CG-CCUACCGCUAU----------CGGUU------UAGGu -5'
11469 5' -54 NC_003085.1 + 40432 0.67 0.688576
Target:  5'- aGCCGCGGuGUGGUGuggaagAGCCGGGc--- -3'
miRNA:   3'- -CGGCGCC-UACCGCua----UCGGUUUaggu -5'
11469 5' -54 NC_003085.1 + 35894 0.67 0.688576
Target:  5'- gGCCGCGGAgucccagGGCcAU-GCCAcggCCAg -3'
miRNA:   3'- -CGGCGCCUa------CCGcUAuCGGUuuaGGU- -5'
11469 5' -54 NC_003085.1 + 47501 0.67 0.655107
Target:  5'- cGCgGCGGAaccugucggUGGCGA-AGCCGcugCCGu -3'
miRNA:   3'- -CGgCGCCU---------ACCGCUaUCGGUuuaGGU- -5'
11469 5' -54 NC_003085.1 + 42376 0.68 0.643892
Target:  5'- uGCCcucgGCGGcAUGaGCGcgGGCCuuGUCCu -3'
miRNA:   3'- -CGG----CGCC-UAC-CGCuaUCGGuuUAGGu -5'
11469 5' -54 NC_003085.1 + 21517 0.68 0.643892
Target:  5'- aCCGCGGAcgaGuaGAUGGgCAAGUCCc -3'
miRNA:   3'- cGGCGCCUa--CcgCUAUCgGUUUAGGu -5'
11469 5' -54 NC_003085.1 + 22774 0.68 0.633788
Target:  5'- cGCCGCGG-UGGCGAcGGCagcggcaacggCCGc -3'
miRNA:   3'- -CGGCGCCuACCGCUaUCGguuua------GGU- -5'
11469 5' -54 NC_003085.1 + 26486 0.68 0.632665
Target:  5'- gGCUGCuuggGGGUGGCaGAcugGGCCGGcucGUCCGg -3'
miRNA:   3'- -CGGCG----CCUACCG-CUa--UCGGUU---UAGGU- -5'
11469 5' -54 NC_003085.1 + 22804 0.68 0.632665
Target:  5'- cGCCGUGGAgucgaaucccuUGGCGcguuGCCAccucaguuugAGUCCGc -3'
miRNA:   3'- -CGGCGCCU-----------ACCGCuau-CGGU----------UUAGGU- -5'
11469 5' -54 NC_003085.1 + 18761 0.68 0.610221
Target:  5'- cGCCGCuGGAgcgGGCGAUGGaCAAAg--- -3'
miRNA:   3'- -CGGCG-CCUa--CCGCUAUCgGUUUaggu -5'
11469 5' -54 NC_003085.1 + 41697 0.68 0.610221
Target:  5'- cGCCGCGacGAUGGCuGAUgacacGGCC--GUCCu -3'
miRNA:   3'- -CGGCGC--CUACCG-CUA-----UCGGuuUAGGu -5'
11469 5' -54 NC_003085.1 + 12586 0.68 0.610221
Target:  5'- uGCUGCuGAUGGUGGU-GCCGGAcaCCAc -3'
miRNA:   3'- -CGGCGcCUACCGCUAuCGGUUUa-GGU- -5'
11469 5' -54 NC_003085.1 + 40487 0.68 0.599023
Target:  5'- cGCUGCuGGcgGGCGucgucgAGCCGGAgCCGc -3'
miRNA:   3'- -CGGCG-CCuaCCGCua----UCGGUUUaGGU- -5'
11469 5' -54 NC_003085.1 + 25170 0.68 0.599023
Target:  5'- aCCGUGGccugGUGGCGGUGGCgAugagcgCCAa -3'
miRNA:   3'- cGGCGCC----UACCGCUAUCGgUuua---GGU- -5'
11469 5' -54 NC_003085.1 + 45007 0.69 0.587855
Target:  5'- cGUCGCGGAUGGUGAUuucGCgCucGUCa- -3'
miRNA:   3'- -CGGCGCCUACCGCUAu--CG-GuuUAGgu -5'
11469 5' -54 NC_003085.1 + 568 0.69 0.587855
Target:  5'- cGgCGCGGcUGGCG--GGCCAAugcUCCGu -3'
miRNA:   3'- -CgGCGCCuACCGCuaUCGGUUu--AGGU- -5'
11469 5' -54 NC_003085.1 + 25137 0.69 0.583398
Target:  5'- cGCCGCGGAgaugucguUGGCcauGGUGGCCucggcgacauucAUCCGc -3'
miRNA:   3'- -CGGCGCCU--------ACCG---CUAUCGGuu----------UAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.