Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11470 | 3' | -52.5 | NC_003085.1 | + | 3639 | 0.73 | 0.412491 |
Target: 5'- aCCGUcgauGCUCGguggcagacggagugGCACGACGAGGUUGAc -3' miRNA: 3'- -GGCGu---UGAGCa--------------CGUGUUGCUCCAGUU- -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 27722 | 0.66 | 0.809988 |
Target: 5'- gUCGCGcCUCGuUGCugG-CGAGGUgGAc -3' miRNA: 3'- -GGCGUuGAGC-ACGugUuGCUCCAgUU- -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 3815 | 0.66 | 0.800154 |
Target: 5'- uUCGCGAUgUUGUGCACGGCGAGc---- -3' miRNA: 3'- -GGCGUUG-AGCACGUGUUGCUCcaguu -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 3708 | 0.67 | 0.790134 |
Target: 5'- aCGCAGCgcgaCGUGC-CAcGCGAGGcgUCAGc -3' miRNA: 3'- gGCGUUGa---GCACGuGU-UGCUCC--AGUU- -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 10023 | 0.67 | 0.759069 |
Target: 5'- gCCGCccGAgUCcuuUGCGCcauGCGAGGUCGAg -3' miRNA: 3'- -GGCG--UUgAGc--ACGUGu--UGCUCCAGUU- -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 35829 | 0.68 | 0.704701 |
Target: 5'- gCCGCAgaaGCUcCG-GCGCcaggcgcucguaGACGAGGUCGu -3' miRNA: 3'- -GGCGU---UGA-GCaCGUG------------UUGCUCCAGUu -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 8759 | 0.69 | 0.659771 |
Target: 5'- -aGCGGCUCGU-CACuAACGAGG-CGAa -3' miRNA: 3'- ggCGUUGAGCAcGUG-UUGCUCCaGUU- -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 23275 | 0.7 | 0.588386 |
Target: 5'- gCGCAGCUCGUcGCGCAaaucguccacggcuAUGGGGUg-- -3' miRNA: 3'- gGCGUUGAGCA-CGUGU--------------UGCUCCAguu -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 31891 | 0.73 | 0.441025 |
Target: 5'- uCCGCGAUgcCGUGCGgAACGAGG-CGGa -3' miRNA: 3'- -GGCGUUGa-GCACGUgUUGCUCCaGUU- -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 14477 | 0.72 | 0.492714 |
Target: 5'- gCCaGCAg--CGUGCGC-ACGAGGUCAu -3' miRNA: 3'- -GG-CGUugaGCACGUGuUGCUCCAGUu -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 48818 | 0.72 | 0.503389 |
Target: 5'- gCGguGCUCGaGCGCcucGACGAGGUCc- -3' miRNA: 3'- gGCguUGAGCaCGUG---UUGCUCCAGuu -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 2636 | 0.7 | 0.569283 |
Target: 5'- gUCGCAACUCG-GCG--GCGAGGUgAu -3' miRNA: 3'- -GGCGUUGAGCaCGUguUGCUCCAgUu -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 22505 | 0.68 | 0.693551 |
Target: 5'- gCCG-AGCUCG-GaCGCGAUGAGGUUGAa -3' miRNA: 3'- -GGCgUUGAGCaC-GUGUUGCUCCAGUU- -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 9397 | 0.68 | 0.726762 |
Target: 5'- -aGCGaaACUCGUGC-CAuCGGGGUUGAa -3' miRNA: 3'- ggCGU--UGAGCACGuGUuGCUCCAGUU- -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 28514 | 0.68 | 0.726762 |
Target: 5'- aCCGCAcCUCGUGCcagACGcgcGCGGGGcUCc- -3' miRNA: 3'- -GGCGUuGAGCACG---UGU---UGCUCC-AGuu -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 28137 | 0.67 | 0.759069 |
Target: 5'- -gGUGAUgcgCGUGCugA-CGAGGUCGAu -3' miRNA: 3'- ggCGUUGa--GCACGugUuGCUCCAGUU- -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 18335 | 0.67 | 0.790134 |
Target: 5'- aCGCAcgaACUCG-GCGCGcugcuCGGGGUUGAg -3' miRNA: 3'- gGCGU---UGAGCaCGUGUu----GCUCCAGUU- -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 19422 | 0.67 | 0.794164 |
Target: 5'- gCUGCAACUUGUGCugGcccuggaagccgcggACGAcGUCGc -3' miRNA: 3'- -GGCGUUGAGCACGugU---------------UGCUcCAGUu -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 33248 | 0.66 | 0.809988 |
Target: 5'- gCCGCGAUgaggaGCACGGCGAGGa--- -3' miRNA: 3'- -GGCGUUGagca-CGUGUUGCUCCaguu -5' |
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11470 | 3' | -52.5 | NC_003085.1 | + | 20680 | 1.08 | 0.00187 |
Target: 5'- gCCGCAACUCGUGCACAACGAGGUCAAu -3' miRNA: 3'- -GGCGUUGAGCACGUGUUGCUCCAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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